Daniele Tavernari

ScholarGPS® ID: 99672714089974

Affiliation

Swiss Institute of Bioinformatics, Lausanne, Switzerland

Affiliation History

Field

Life Sciences

Discipline

Biology and Biological Sciences

Top Specialties

Cancer | Chromatin

Metrics Summary

Publication Count

Predicted Citations

792

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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Functional hypoxia reduces mitochondrial calcium uptake (journal article) Donnelly, Chris \| Komlódi, Timea \| Cecatto, Cristiane \| Cardoso, Luiza H.D. \| Compagnion, Anne-Claire \| Matera, Alessandro \| Tavernari, Daniele \| Campiche, Olivier \| Paolicelli, Rosa Chiara \| Zanou, Nadège \| ... \| Place, Nicolas Redox Biology, volume 71 (2024). 10.1016/j.redox.2024.103037 Cite \| Source
Cis‐regulatory effect of HPV integration is constrained by host chromatin architecture in cervical cancers (journal article) Singh, Anurag Kumar \| Walavalkar, Kaivalya \| Tavernari, Daniele \| Ciriello, Giovanni \| Notani, Dimple \| Sabarinathan, Radhakrishnan Molecular Oncology, volume 18, issue 5, pages 1189-1208 (2024). 10.1002/1878-0261.13559 Cited by (2) \| Cite \| Source
ANKRD1 is a mesenchymal-specific driver of cancer-associated fibroblast activation bridging androgen receptor loss to AP-1 activation (journal article) Mazzeo, Luigi \| Ghosh, Soumitra \| Di Cicco, Emery \| Isma, Jovan \| Tavernari, Daniele \| Samarkina, Anastasia \| Ostano, Paola \| Youssef, Markus K. \| Simon, Christian \| Dotto, G. Paolo Nature Communications, volume 15, issue 1 (2024). 10.1038/s41467-024-45308-w Cited by (2) \| Cite \| Source
CellCharter reveals spatial cell niches associated with tissue remodeling and cell plasticity (journal article) Varrone, Marco \| Tavernari, Daniele \| Santamaria-Martínez, Albert \| Walsh, Logan A. \| Ciriello, Giovanni Nature Genetics, volume 56, issue 1, pages 74-84 (2024). 10.1038/s41588-023-01588-4 Cited by (6) \| Cite \| Source
Whole-genome doubling drives oncogenic loss of chromatin segregation (journal article) Lambuta, Ruxandra A. \| Nanni, Luca \| Liu, Yuanlong \| Diaz-Miyar, Juan \| Iyer, Arvind \| Tavernari, Daniele \| Katanayeva, Natalya \| Ciriello, Giovanni \| Oricchio, Elisa Nature, volume 615, issue 7954, pages 925-933 (2023). 10.1038/s41586-023-05794-2 Cited by (15) \| Cite \| Source
Methods for the Analysis of Topologically Associating Domains (TADs) (book chapter) In Hi-C Data Analysis Zufferey, Marie \| Tavernari, Daniele \| Ciriello, Giovanni Springer US (2022) 10.1007/978-1-0716-1390-0_3 Cited by (2) \| Cite \| Source
Systematic assessment of gene co-regulation within chromatin domains determines differentially active domains across human cancers (journal article) Zufferey, Marie \| Liu, Yuanlong \| Tavernari, Daniele \| Mina, Marco \| Ciriello, Giovanni Genome Biology, volume 22, issue 1 (2021). 10.1186/s13059-021-02436-6 Cited by (2) \| Cite \| Source
Nongenetic Evolution Drives Lung Adenocarcinoma Spatial Heterogeneity and Progression (journal article) Tavernari, Daniele \| Battistello, Elena \| Dheilly, Elie \| Petruzzella, Aaron S. \| Mina, Marco \| Sordet-Dessimoz, Jessica \| Peters, Solange \| Krueger, Thorsten \| Gfeller, David \| Riggi, Nicolo \| ... \| Ciriello, Giovanni Cancer Discovery, volume 11, issue 6, pages 1490-1507 (2021). 10.1158/2159-8290.CD-20-1274 Cited by (63) \| Cite \| Source
Systematic inference and comparison of multi-scale chromatin sub-compartments connects spatial organization to cell phenotypes (journal article) Liu, Yuanlong \| Nanni, Luca \| Sungalee, Stephanie \| Zufferey, Marie \| Tavernari, Daniele \| Mina, Marco \| Ceri, Stefano \| Oricchio, Elisa \| Ciriello, Giovanni Nature Communications, volume 12, issue 1 (2021). 10.1038/s41467-021-22666-3 Cited by (45) \| Cite \| Source
Histone acetylation dynamics modulates chromatin conformation and allele-specific interactions at oncogenic loci (journal article) Sungalee, Stephanie \| Liu, Yuanlong \| Lambuta, Ruxandra A. \| Katanayeva, Natalya \| Donaldson Collier, Maria \| Tavernari, Daniele \| Roulland, Sandrine \| Ciriello, Giovanni \| Oricchio, Elisa Nature Genetics, volume 53, issue 5, pages 650-662 (2021). 10.1038/s41588-021-00842-x Cited by (33) \| Cite \| Source
Sustained androgen receptor signaling is a determinant of melanoma cell growth potential and tumorigenesis (journal article) Ma, Min \| Ghosh, Soumitra \| Tavernari, Daniele \| Katarkar, Atul \| Clocchiatti, Andrea \| Mazzeo, Luigi \| Samarkina, Anastasia \| Epiney, Justine \| Yu, Yi-Ru \| Ho, Ping-Chih \| ... \| Dotto, G. Paolo Journal of Experimental Medicine, volume 218, issue 2 (2021). 10.1084/jem.20201137 Cited by (27) \| Cite \| Source
Discovering functional evolutionary dependencies in human cancers (journal article) Mina, Marco \| Iyer, Arvind \| Tavernari, Daniele \| Raynaud, Franck \| Ciriello, Giovanni Nature Genetics, volume 52, issue 11, pages 1198-1207 (2020). 10.1038/s41588-020-0703-5 Cited by (16) \| Cite \| Source
Linking aberrant chromatin features in chronic lymphocytic leukemia to transcription factor networks (journal article) Mallm, Jan‐Philipp \| Iskar, Murat \| Ishaque, Naveed \| Klett, Lara C \| Kugler, Sabrina J \| Muino, Jose M \| Teif, Vladimir B \| Poos, Alexandra M \| Großmann, Sebastian \| Erdel, Fabian \| ... \| Rippe, Karsten Molecular Systems Biology, volume 15, issue 5 (2019). 10.15252/msb.20188339 Cited by (31) \| Cite \| Source
EZH2 oncogenic mutations drive epigenetic, transcriptional, and structural changes within chromatin domains (journal article) Donaldson-Collier, Maria C. \| Sungalee, Stephanie \| Zufferey, Marie \| Tavernari, Daniele \| Katanayeva, Natalya \| Battistello, Elena \| Mina, Marco \| Douglass, Kyle M. \| Rey, Timo \| Raynaud, Franck \| ... \| Oricchio, Elisa Nature Genetics, volume 51, issue 3, pages 517-528 (2019). 10.1038/s41588-018-0338-y Cited by (89) \| Cite \| Source
Comparison of computational methods for the identification of topologically associating domains (journal article) Zufferey, Marie \| Tavernari, Daniele \| Oricchio, Elisa \| Ciriello, Giovanni Genome Biology, volume 19, issue 1 (2018). 10.1186/s13059-018-1596-9 Cited by (132) \| Cite \| Source
Pan-cancer inference of intra-tumor heterogeneity reveals associations with different forms of genomic instability (journal article) Raynaud, Franck \| Mina, Marco \| Tavernari, Daniele \| Ciriello, Giovanni PLOS Genetics, volume 14, issue 9, pages e1007669- (2018). 10.1371/journal.pgen.1007669 Cited by (67) \| Cite \| Source \| Open Access
Pan-SRC kinase inhibition blocks B-cell receptor oncogenic signaling in non-Hodgkin lymphoma (journal article) Battistello, Elena \| Katanayeva, Natalya \| Dheilly, Elie \| Tavernari, Daniele \| Donaldson, Maria C. \| Bonsignore, Luca \| Thome, Margot \| Christie, Amanda L. \| Murakami, Mark A. \| Michielin, Olivier \| ... \| Oricchio, Elisa Blood, volume 131, issue 21, pages 2345-2356 (2018). 10.1182/blood-2017-10-809210 Cited by (22) \| Cite \| Source
Interrogating functional dependencies between genomic alterations can facilitate precision medicine approaches in cancer (journal article) Mina, M \| Raynaud, F \| Tavernari, D \| Battistello, E \| Sungalee, S \| Saghafinia, S \| Laessle, T \| Sanchez-Vega, F \| Schultz, N \| Oricchio, E \| Ciriello, G Annals of Oncology, volume 28, issue suppl_7 (2017). 10.1093/annonc/mdx508.001 Cite \| Source \| Open Access
Conditional Selection of Genomic Alterations Dictates Cancer Evolution and Oncogenic Dependencies (journal article) Mina, Marco \| Raynaud, Franck \| Tavernari, Daniele \| Battistello, Elena \| Sungalee, Stephanie \| Saghafinia, Sadegh \| Laessle, Titouan \| Sanchez-Vega, Francisco \| Schultz, Nikolaus \| Oricchio, Elisa \| Ciriello, Giovanni Cancer Cell, volume 32, issue 2, pages 155-168.e6 (2017). 10.1016/j.ccell.2017.06.010 Cited by (87) \| Cite \| Source