Athma A. Pai

ScholarGPS® ID: 97733153556473

Affiliation

University of Massachusetts Medical School, Worcester, United States

Affiliation History

Field

Life Sciences

Discipline

Biology and Biological Sciences

Top Specialties

Gene Expression | RNA | Infection | DNA

Metrics Summary

Publication Count

Predicted Citations

7,558

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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Guidelines and important considerations for ‘omics-level studies (book chapter) In Rigor and Reproducibility in Genetics and Genomics Luca, Francesca \| Pai, Athma A. Elsevier (2024) 10.1016/B978-0-12-817218-6.00013-9 Cite \| Source
Widespread occurrence of hybrid internal-terminal exons in human transcriptomes (journal article) Fiszbein, Ana \| McGurk, Michael \| Calvo-Roitberg, Ezequiel \| Kim, GyeungYun \| Burge, Christopher B. \| Pai, Athma A. Science Advances, volume 8, issue 3 (2022). 10.1126/sciadv.abk1752 Cited by (3) \| Cite \| Source
A divalent siRNA chemical scaffold for potent and sustained modulation of gene expression throughout the central nervous system (journal article) Alterman, Julia F. \| Godinho, Bruno M. D. C. \| Hassler, Matthew R. \| Ferguson, Chantal M. \| Echeverria, Dimas \| Sapp, Ellen \| Haraszti, Reka A. \| Coles, Andrew H. \| Conroy, Faith \| Miller, Rachael \| ... \| Khvorova, Anastasia Nature Biotechnology, volume 37, issue 8, pages 884-894 (2019). 10.1038/s41587-019-0205-0 Cited by (126) \| Cite \| Source
Environmental influences on RNA processing: Biochemical, molecular and genetic regulators of cellular response (journal article) Pai, Athma A. \| Luca, Francesca WIREs RNA, volume 10, issue 1 (2019). 10.1002/wrna.1503 Cited by (24) \| Cite \| Source
Numerous recursive sites contribute to accuracy of splicing in long introns in flies (journal article) Pai, Athma A. \| Paggi, Joseph M. \| Yan, Paul \| Adelman, Karen \| Burge, Christopher B. PLOS Genetics, volume 14, issue 8, pages e1007588- (2018). 10.1371/journal.pgen.1007588 Cited by (13) \| Cite \| Source \| Open Access
Bayesian nonparametric discovery of isoforms and individual specific quantification (journal article) Aguiar, Derek \| Cheng, Li-Fang \| Dumitrascu, Bianca \| Mordelet, Fantine \| Pai, Athma A. \| Engelhardt, Barbara E. Nature Communications, volume 9, issue 1 (2018). 10.1038/s41467-018-03402-w Cited by (7) \| Cite \| Source \| Open Access
The kinetics of pre-mRNA splicing in the Drosophila genome and the influence of gene architecture (journal article) Pai, Athma A \| Henriques, Telmo \| McCue, Kayla \| Burkholder, Adam \| Adelman, Karen \| Burge, Christopher B eLife, volume 6 (2017). 10.7554/eLife.32537 Cited by (46) \| Cite \| Source \| Open Access
Environmental perturbations lead to extensive directional shifts in RNA processing (journal article) Richards, Allison L. \| Watza, Donovan \| Findley, Anthony \| Alazizi, Adnan \| Wen, Xiaoquan \| Pai, Athma A. \| Pique-Regi, Roger \| Luca, Francesca PLOS Genetics, volume 13, issue 10, pages e1006995- (2017). 10.1371/journal.pgen.1006995 Cited by (23) \| Cite \| Source \| Open Access
Intron Length and Recursive Sites are Major Determinants of Splicing Efficiency in Flies (journal article) Pai, Athma A. \| Henriques, Telmo \| Paggi, Joseph M. \| Burkholder, Adam \| Adelman, Karen \| Burge, Christopher B. bioRxiv (2017). 10.1101/107995 Cited by (2) \| Cite \| Source \| Open Access
Widespread Shortening of 3’ Untranslated Regions and Increased Exon Inclusion Are Evolutionarily Conserved Features of Innate Immune Responses to Infection (journal article) Pai, Athma A. \| Baharian, Golshid \| Pagé Sabourin, Ariane \| Brinkworth, Jessica F. \| Nédélec, Yohann \| Foley, Joseph W. \| Grenier, Jean-Christophe \| Siddle, Katherine J. \| Dumaine, Anne \| Yotova, Vania \| ... \| Barreiro, Luis B. PLOS Genetics, volume 12, issue 9, pages e1006338- (2016). 10.1371/journal.pgen.1006338 Cited by (68) \| Cite \| Source \| Open Access
Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters (journal article) Chen, Yun \| Pai, Athma A \| Herudek, Jan \| Lubas, Michal \| Meola, Nicola \| Järvelin, Aino I \| Andersson, Robin \| Pelechano, Vicent \| Steinmetz, Lars M \| Jensen, Torben Heick \| Sandelin, Albin Nature Genetics, volume 48, issue 9, pages 984-994 (2016). 10.1038/ng.3616 Cited by (65) \| Cite \| Source \| Open Access
Many long intergenic non-coding RNAs distally regulate mRNA gene expression levels (journal article) McDowell, Ian C. \| Pai, Athma A. \| Guo, Cong \| Vockley, Christopher M. \| Brown, Christopher D. \| Reddy, Timothy E. \| Engelhardt, Barbara E. bioRxiv (2016). 10.1101/044719 Cited by (11) \| Cite \| Source \| Open Access
Widespread Shortening of 3' Untranslated Regions and Increased Exon Inclusion Are Evolutionarily Conserved Features of Innate Immune Responses to Infection. (journal article) Pai, Athma A \| Baharian, Golshid \| Pagé Sabourin, Ariane \| Brinkworth, Jessica F \| Nédélec, Yohann \| Foley, Joseph W \| Grenier, Jean-Christophe \| Siddle, Katherine J \| Dumaine, Anne \| Yotova, Vania \| ... \| Barreiro, Luis B PLoS genetics, volume 12, issue 9 (2016). Cited by (1) \| Cite
Widespread shortening of 3' untranslated regions and increased exon inclusion characterize the human macrophage response to infection (journal article) Pai, Athma A. \| Baharian, Golshid \| Sabourin, Ariane Pagé \| Nédélec, Yohann \| Grenier, Jean-Christophe \| Siddle, Katherine J. \| Dumaine, Anne \| Yotova, Vania \| Burge, Christopher B. \| Barreiro, Luis B. bioRxiv (2015). 10.1101/026831 Cited by (11) \| Cite \| Source \| Open Access
The Genetic and Mechanistic Basis for Variation in Gene Regulation (journal article) Pai, Athma A. \| Pritchard, Jonathan K. \| Gilad, Yoav PLoS Genetics, volume 11, issue 1, pages e1004857- (2015). 10.1371/journal.pgen.1004857 Cited by (123) \| Cite \| Source \| Open Access
RNA-seq: impact of RNA degradation on transcript quantification (journal article) Gallego Romero, Irene \| Pai, Athma A \| Tung, Jenny \| Gilad, Yoav BMC Biology, volume 12, issue 1 (2014). 10.1186/1741-7007-12-42 Cited by (309) \| Cite \| Source \| Open Access
Comparative studies of gene regulatory mechanisms (journal article) Pai, Athma A \| Gilad, Yoav Current Opinion in Genetics & Development, volume 29 (2014). 10.1016/j.gde.2014.08.010 Cited by (12) \| Cite \| Source \| Open Access
Impact of RNA degradation on measurements of gene expression (journal article) Romero, Irene Gallego \| Pai, Athma A. \| Tung, Jenny \| Gilad, Yoav bioRxiv (2014). 10.1101/002261 Cited by (1) \| Cite \| Source \| Open Access
Controls of Nucleosome Positioning in the Human Genome (journal article) Gaffney, Daniel J. \| McVicker, Graham \| Pai, Athma A. \| Fondufe-Mittendorf, Yvonne N. \| Lewellen, Noah \| Michelini, Katelyn \| Widom, Jonathan \| Gilad, Yoav \| Pritchard, Jonathan K. PLoS Genetics, volume 8, issue 11, pages e1003036- (2012). 10.1371/journal.pgen.1003036 Cited by (229) \| Cite \| Source \| Open Access
The Contribution of RNA Decay Quantitative Trait Loci to Inter-Individual Variation in Steady-State Gene Expression Levels (journal article) Pai, Athma A. \| Cain, Carolyn E. \| Mizrahi-Man, Orna \| De Leon, Sherryl \| Lewellen, Noah \| Veyrieras, Jean-Baptiste \| Degner, Jacob F. \| Gaffney, Daniel J. \| Pickrell, Joseph K. \| Stephens, Matthew \| ... \| Gilad, Yoav PLoS Genetics, volume 8, issue 10, pages e1003000- (2012). 10.1371/journal.pgen.1003000 Cited by (84) \| Cite \| Source \| Open Access