Barış Ekim

ScholarGPS® ID: 96766417450271

Affiliation

Massachusetts Institute of Technology, Cambridge, Massachusetts, United States

Affiliation History

Field

Engineering and Computer Science

Discipline

Computer Science

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Publication Count

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Publications and Citation History

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Designing efficient randstrobes for sequence similarity analyses (journal article) Karami, Moein \| Soltani Mohammadi, Aryan \| Martin, Marcel \| Ekim, Barış \| Shen, Wei \| Guo, Lidong \| Xu, Mengyang \| Pibiri, Giulio Ermanno \| Patro, Rob \| Sahlin, Kristoffer Bioinformatics, volume 40, issue 4 (2024). 10.1093/bioinformatics/btae187 Cite \| Source
Efficient minimizer orders for large values of k using minimum decycling sets (journal article) Pellow, David \| Pu, Lianrong \| Ekim, Bariş \| Kotlar, Lior \| Berger, Bonnie \| Shamir, Ron \| Orenstein, Yaron Genome Research (2023). 10.1101/gr.277644.123 Cited by (1) \| Cite \| Source
Efficient mapping of accurate long reads in minimizer space with mapquik (journal article) Ekim, Bariş \| Sahlin, Kristoffer \| Medvedev, Paul \| Berger, Bonnie \| Chikhi, Rayan Genome Research (2023). 10.1101/gr.277679.123 Cited by (2) \| Cite \| Source
Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computer (journal article) Ekim, Barış \| Berger, Bonnie \| Chikhi, Rayan Cell Systems, volume 12, issue 10, pages 958-968.e6 (2021). 10.1016/j.cels.2021.08.009 Cited by (42) \| Cite \| Source
A Randomized Parallel Algorithm for Efficiently Finding Near-Optimal Universal Hitting Sets (book chapter) In Research in Computational Molecular Biology Ekim, Barış \| Berger, Bonnie \| Orenstein, Yaron Springer International Publishing (2020) 10.1007/978-3-030-45257-5_3 Cited by (11) \| Cite \| Source