Joshua E. Elias

ScholarGPS® ID: 95882837115786

Affiliation

Biohub, San Francisco, United States

Affiliation History

Field

Life Sciences

Discipline

Biology and Biological Sciences

Top Specialties

Metrics Summary

Publication Count

102

Predicted Citations

23,353

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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Human-derived fecal microbiota transplantation alleviates social deficits of the BTBR mouse model of autism through a potential mechanism involving vitamin B6 metabolism (journal article) Zheng, Lifeng \| Jiao, Yinming \| Zhong, Haolin \| Tan, Yan \| Yin, Yiming \| Liu, Yanhong \| Liu, Ding \| Wu, Manli \| Wang, Guoyun \| Huang, Jinqun \| ... \| Kui, Ling mSystems, volume 9, issue 6 (2024). 10.1128/msystems.00257-24 Cited by (1) \| Cite \| Source
SARS-CoV-2 Nsp1 cooperates with initiation factors EIF1 and 1A to selectively enhance translation of viral RNA (journal article) Aviner, Ranen \| Lidsky, Peter V. \| Xiao, Yinghong \| Tassetto, Michel \| Kim, Damian \| Zhang, Lichao \| McAlpine, Patrick L. \| Elias, Joshua \| Frydman, Judith \| Andino, Raul PLOS Pathogens, volume 20, issue 2, pages e1011535- (2024). 10.1371/journal.ppat.1011535 Cited by (2) \| Cite \| Source
Cell Size Contributes to Single-Cell Proteome Variation (journal article) Lanz, Michael C. \| Fuentes Valenzuela, Lucas \| Elias, Joshua E. \| Skotheim, Jan M. Journal of Proteome Research, volume 22, issue 12, pages 3773-3779 (2023). 10.1021/acs.jproteome.3c00441 Cited by (3) \| Cite \| Source
Extracellular vesicles in systemic juvenile idiopathic arthritis (journal article) Maller, Justine \| Morgan, Terry \| Morita, Mayu \| McCarthy, Frank \| Jung, Yunshin \| Svensson, Katrin J \| Elias, Joshua E \| Macaubas, Claudia \| Mellins, Elizabeth Journal of Leukocyte Biology, volume 114, issue 5, pages 387-403 (2023). 10.1093/jleuko/qiad059 Cited by (2) \| Cite \| Source
Tip60-mediated H2A.Z acetylation promotes neuronal fate specification and bivalent gene activation (journal article) Janas, Justyna A. \| Zhang, Lichao \| Luu, Jacklyn H. \| Demeter, Janos \| Meng, Lingjun \| Marro, Samuele G. \| Mall, Moritz \| Mooney, Nancie A. \| Schaukowitch, Katie \| Ng, Yi Han \| ... \| Wernig, Marius Molecular Cell, volume 82, issue 24, pages 4627-4646.e14 (2022). 10.1016/j.molcel.2022.11.002 Cited by (11) \| Cite \| Source
Phosphoproteome Dynamics of Streptomyces rimosus during Submerged Growth and Antibiotic Production (journal article) Šarić, Ela \| Quinn, Gerry A. \| Nalpas, Nicolas \| Paradžik, Tina \| Kazazić, Saša \| Filić, Želimira \| Šemanjski, Maja \| Herron, Paul \| Hunter, Iain \| Maček, Boris \| Vujaklija, Dušica mSystems, volume 7, issue 5 (2022). 10.1128/msystems.00199-22 Cited by (3) \| Cite \| Source
Delineation of proteome changes driven by cell size and growth rate (journal article) Zatulovskiy, Evgeny \| Lanz, Michael C. \| Zhang, Shuyuan \| McCarthy, Frank \| Elias, Joshua E. \| Skotheim, Jan M. Frontiers in Cell and Developmental Biology, volume 10 (2022). 10.3389/fcell.2022.980721 Cited by (10) \| Cite \| Source
Increasing cell size remodels the proteome and promotes senescence (journal article) Lanz, Michael C. \| Zatulovskiy, Evgeny \| Swaffer, Matthew P. \| Zhang, Lichao \| Ilerten, Ilayda \| Zhang, Shuyuan \| You, Dong Shin \| Marinov, Georgi \| McAlpine, Patrick \| Elias, Joshua E. \| Skotheim, Jan M. Molecular Cell, volume 82, issue 17, pages 3255-3269.e8 (2022). 10.1016/j.molcel.2022.07.017 Cited by (53) \| Cite \| Source
MetaProClust-MS1: an MS1 Profiling Approach for Large-Scale Microbiome Screening (journal article) Simopoulos, Caitlin M. A. \| Ning, Zhibin \| Li, Leyuan \| Khamis, Mona M. \| Zhang, Xu \| Lavallée-Adam, Mathieu \| Figeys, Daniel mSystems, volume 7, issue 4 (2022). 10.1128/msystems.00381-22 Cited by (5) \| Cite \| Source
Tuning DO:DM Ratios Modulates MHC Class II Immunopeptidomes (journal article) Olsson, Niclas \| Jiang, Wei \| Adler, Lital N. \| Mellins, Elizabeth D. \| Elias, Joshua E. Molecular & Cellular Proteomics, volume 21, issue 3, pages 100204- (2022). 10.1016/j.mcpro.2022.100204 Cited by (7) \| Cite \| Source
An efficient urine peptidomics workflow identifies chemically defined dietary gluten peptides from patients with celiac disease (journal article) Palanski, Brad A. \| Weng, Nielson \| Zhang, Lichao \| Hilmer, Andrew J. \| Fall, Lalla A. \| Swaminathan, Kavya \| Jabri, Bana \| Sousa, Carolina \| Fernandez-Becker, Nielsen Q. \| Khosla, Chaitan \| Elias, Joshua E. Nature Communications, volume 13, issue 1 (2022). 10.1038/s41467-022-28353-1 Cited by (23) \| Cite \| Source
Establishment and characterization of stable, diverse, fecal-derived in vitro microbial communities that model the intestinal microbiota (journal article) Aranda-Díaz, Andrés \| Ng, Katharine Michelle \| Thomsen, Tani \| Real-Ramírez, Imperio \| Dahan, Dylan \| Dittmar, Susannah \| Gonzalez, Carlos Gutierrez \| Chavez, Taylor \| Vasquez, Kimberly S. \| Nguyen, Taylor H. \| ... \| Huang, Kerwyn Casey Cell Host & Microbe, volume 30, issue 2, pages 260-272.e5 (2022). 10.1016/j.chom.2021.12.008 Cited by (44) \| Cite \| Source
Starvation induces shrinkage of the bacterial cytoplasm (journal article) Shi, Handuo \| Westfall, Corey S. \| Kao, Jesse \| Odermatt, Pascal D. \| Anderson, Sarah E. \| Cesar, Spencer \| Sievert, Montana \| Moore, Jeremy \| Gonzalez, Carlos G. \| Zhang, Lichao \| ... \| Levin, Petra Anne Proceedings of the National Academy of Sciences, volume 118, issue 24 (2021). 10.1073/pnas.2104686118 Cited by (29) \| Cite \| Source
Protein aggregation and the evolution of stress resistance in clinical yeast (journal article) Chen, Yiwen R. \| Ziv, Inbal \| Swaminathan, Kavya \| Elias, Joshua E. \| Jarosz, Daniel F. Philosophical Transactions of the Royal Society B: Biological Sciences, volume 376, issue 1826, pages 20200127- (2021). 10.1098/rstb.2020.0127 Cited by (5) \| Cite \| Source
An Integrated Genomic, Proteomic, and Immunopeptidomic Approach to Discover Treatment-Induced Neoantigens (journal article) Olsson, Niclas \| Heberling, Marlene L. \| Zhang, Lichao \| Jhunjhunwala, Suchit \| Phung, Qui T. \| Lin, Sarah \| Anania, Veronica G. \| Lill, Jennie R. \| Elias, Joshua E. Frontiers in Immunology, volume 12 (2021). 10.3389/fimmu.2021.662443 Cited by (18) \| Cite \| Source
Precise regulation of the relative rates of surface area and volume synthesis in bacterial cells growing in dynamic environments (journal article) Shi, Handuo \| Hu, Yan \| Odermatt, Pascal D. \| Gonzalez, Carlos G. \| Zhang, Lichao \| Elias, Joshua E. \| Chang, Fred \| Huang, Kerwyn Casey Nature Communications, volume 12, issue 1 (2021). 10.1038/s41467-021-22092-5 Cited by (27) \| Cite \| Source
Automated Ligand Purification Platform Accelerates Immunopeptidome Analysis by Mass Spectrometry (journal article) Zhang, Lichao \| McAlpine, Patrick L. \| Heberling, Marlene L. \| Elias, Joshua E. Journal of Proteome Research, volume 20, issue 1, pages 393-408 (2021). 10.1021/acs.jproteome.0c00464 Cited by (17) \| Cite \| Source
Proteomic Discovery of Stool Protein Biomarkers for Distinguishing Pediatric Inflammatory Bowel Disease Flares (journal article) Casavant, Ellen \| Park, K.T. \| Elias, Joshua E. Clinical Gastroenterology and Hepatology, volume 18, issue 11, pages 2618-2619.e1 (2020). 10.1016/j.cgh.2019.08.052 Cited by (4) \| Cite \| Source
Methyltransferase-like 21C (METTL21C) methylates alanine tRNA synthetase at Lys-943 in muscle tissue (journal article) Zoabi, Muhammad \| Zhang, Lichao \| Li, Tie-Mei \| Elias, Josh E. \| Carlson, Scott M. \| Gozani, Or Journal of Biological Chemistry, volume 295, issue 33, pages 11822-11832 (2020). 10.1074/jbc.RA120.014505 Cited by (13) \| Cite \| Source
High-Throughput Stool Metaproteomics: Method and Application to Human Specimens (journal article) Gonzalez, Carlos G. \| Wastyk, Hannah C. \| Topf, Madeline \| Gardner, Christopher D. \| Sonnenburg, Justin L. \| Elias, Joshua E. mSystems, volume 5, issue 3 (2020). 10.1128/mSystems.00200-20 Cited by (14) \| Cite \| Source

Title	Investigators	Year	Cost	Agency
Modeling the Molecular Determinants of Induced Anti-Tumor Immune Responses in Mantle Cell Lymphoma	Alizadeh, Ash Arash \| Davis, Mark Morris \| Elias, Joshua E \| Levy, Ronald	2018	$632,932	NATIONAL CANCER INSTITUTE
Characterizing head and neck tumor neoantigensand T cells: looking beyond the usual suspects	Elias, Joshua E \| Sunwoo, John B	2018	$509,534	NATIONAL INSTITUTE OF DENTAL & CRANIOFACIAL RESEARCH
Modeling the Molecular Determinants of Induced Anti-Tumor Immune Responses in Mantle Cell Lymphoma	Alizadeh, Ash Arash \| Davis, Mark Morris \| Elias, Joshua E \| Levy, Ronald	2017	$643,804	NATIONAL CANCER INSTITUTE
Modeling the Molecular Determinants of Induced Anti-Tumor Immune Responses in Mantle Cell Lymphoma	Alizadeh, ARASH ASH (contact) \| Elias, Joshua E \| Davis, Mark Morris \| Levy, Ronald	2016	$638,806	NATIONAL CANCER INSTITUTE
Modeling the Molecular Determinants of Induced Anti-Tumor Immune Responses in Mantle Cell Lymphoma	Alizadeh, ARASH ASH (contact) \| Elias, Joshua E \| Davis, Mark Morris \| Levy, Ronald	2015	$626,964	NATIONAL CANCER INSTITUTE
Discovering Immediate-Early Events in Hedgehog Signal Transduction	Elias, Joshua E	2014	$228,906	EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT