Sridhar Hannenhalli

ScholarGPS® ID: 95061002196744

Affiliation
National Cancer Institute, National Institutes of Health, Bethesda, United States
Affiliation History

Field
Life Sciences
Discipline
Biology and Biological Sciences
Top Specialties
Genomics | Computational Biology | Transcription Factor | Cancer | Bioinformatics | Gene Expression | Nucleic Acid | DNA | Heart Failure | Epigenomics | Transcriptomics Technologies | Mammal | Cis-regulatory Element | Stem Cell | Breast Cancer
Metrics Summary
Publication Count
154
Predicted Citations
10,611
Predicted h-index
55
Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

  • Publications
  • Books
  • Patents
  • NIH/NSF
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Network-based approach elucidates critical genes in BRCA subtypes and chemotherapy response in triple negative breast cancer (journal article)
Agrawal, Piyush | Jain, Navami | Gopalan, Vishaka | Timon, Annan | Singh, Arashdeep | Rajagopal, Padma S. | Hannenhalli, Sridhar
iScience, volume 27, issue 5, pages 109752- (2024).
10.1016/j.isci.2024.109752
Cite | Source
A novel hypergraph model for identifying and prioritizing personalized drivers in cancer (journal article)
Zhang, Naiqian | Ma, Fubin | Guo, Dong | Pang, Yuxuan | Wang, Chenye | Zhang, Yusen | Zheng, Xiaoqi | Wang, Mingyi
PLOS Computational Biology, volume 20, issue 4, pages e1012068- (2024).
10.1371/journal.pcbi.1012068
Cite | Source
Transcription factors organize into functional groups on the linear genome and in 3D chromatin (journal article)
Vadnala, Rakesh Netha | Hannenhalli, Sridhar | Narlikar, Leelavati | Siddharthan, Rahul
Heliyon, volume 9, issue 8, pages e18211- (2023).
10.1016/j.heliyon.2023.e18211
Cited by (3) | Cite | Source
Noncoding RNA circuitry in melanoma onset, plasticity, and therapeutic response (journal article)
Grafanaki, Katerina | Grammatikakis, Ioannis | Ghosh, Arin | Gopalan, Vishaka | Olgun, Gulden | Liu, Huaitian | Kyriakopoulos, George C. | Skeparnias, Ilias | Georgiou, Sophia | Stathopoulos, Constantinos | ... | Day, Chi-Ping
Pharmacology & Therapeutics, volume 248 (2023).
10.1016/j.pharmthera.2023.108466
Cited by (6) | Cite | Source
Protocol for using single-cell sequencing to study the heterogeneity of NF1 nerve sheath tumors from clinical biospecimens (journal article)
Zhang, Xiyuan | Gopalan, Vishaka | Syed, Neeraja | Hannenhalli, Sridhar | Shern, Jack F.
STAR Protocols, volume 4, issue 2, pages 102297- (2023).
10.1016/j.xpro.2023.102297
Cite | Source
Towards a Synthesis of the Non-Genetic and Genetic Views of Cancer in Understanding Pancreatic Ductal Adenocarcinoma Initiation and Prevention (journal article)
Gopalan, Vishaka | Hannenhalli, Sridhar
Cancers, volume 15, issue 7, pages 2159- (2023).
10.3390/cancers15072159
Cited by (1) | Cite | Source
Transcriptomes of the tumor-adjacent normal tissues are more informative than tumors in predicting recurrence in colorectal cancer patients (journal article)
Kim, Jinho | Kim, Hyunjung | Lee, Min-Seok | Lee, Heetak | Kim, Yeon Jeong | Lee, Woo Yong | Yun, Seong Hyeon | Kim, Hee Cheol | Hong, Hye Kyung | Hannenhalli, Sridhar | ... | Choi, Sun Shim
Journal of Translational Medicine, volume 21, issue 1 (2023).
10.1186/s12967-023-04053-2
Cited by (4) | Cite | Source
De novo human brain enhancers created by single-nucleotide mutations (journal article)
Li, Shan | Hannenhalli, Sridhar | Ovcharenko, Ivan
Science Advances, volume 9, issue 7 (2023).
10.1126/sciadv.add2911
Cited by (3) | Cite | Source
Predicting gene expression changes upon epigenomic drug treatment (journal article)
Agrawal, Piyush | Gopalan, Vishaka | Hannenhalli, Sridhar
F1000Research, volume 12 (2023).
10.12688/f1000research.140273.1
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Predicting gene expression changes upon epigenomic drug treatment (journal article)
Agrawal, Piyush | Gopalan, Vishaka | Hannenhalli, Sridhar
F1000Research, volume 12 (2023).
10.12688/f1000research.140273.2
Cite | Source
Broad misappropriation of developmental splicing profile by cancer in multiple organs (journal article)
Singh, Arashdeep | Rajeevan, Arati | Gopalan, Vishaka | Agrawal, Piyush | Day, Chi-Ping | Hannenhalli, Sridhar
Nature Communications, volume 13, issue 1 (2022).
10.1038/s41467-022-35322-1
Cited by (6) | Cite | Source
Immune cell gene expression signatures in diffuse glioma are associated with IDH mutation status, patient outcome and malignant cell state, and highlight the importance of specific cell subsets in glioma biology (journal article)
Mehani, Bharati | Asanigari, Saleembhasha | Chung, Hye-Jung | Dazelle, Karen | Singh, Arashdeep | Hannenhalli, Sridhar | Aldape, Kenneth
Acta Neuropathologica Communications, volume 10, issue 1 (2022).
10.1186/s40478-022-01323-w
Cited by (11) | Cite | Source
Big data in basic and translational cancer research (journal article)
Jiang, Peng | Sinha, Sanju | Aldape, Kenneth | Hannenhalli, Sridhar | Sahinalp, Cenk | Ruppin, Eytan
Nature Reviews Cancer, volume 22, issue 11, pages 625-639 (2022).
10.1038/s41568-022-00502-0
Cited by (91) | Cite | Source
Single-cell sequencing reveals activation of core transcription factors in PRC2-deficient malignant peripheral nerve sheath tumor (journal article)
Zhang, Xiyuan | Lou, Hannah E. | Gopalan, Vishaka | Liu, Zhihui | Jafarah, Hilda M. | Lei, Haiyan | Jones, Paige | Sayers, Carly M. | Yohe, Marielle E. | Chittiboina, Prashant | ... | Shern, Jack F.
Cell Reports, volume 40, issue 12, pages 111363- (2022).
10.1016/j.celrep.2022.111363
Cited by (5) | Cite | Source
Cross-species identification of cancer resistance–associated genes that may mediate human cancer risk (journal article)
Nair, Nishanth Ulhas | Cheng, Kuoyuan | Naddaf, Lamis | Sharon, Elad | Pal, Lipika R. | Rajagopal, Padma S. | Unterman, Irene | Aldape, Kenneth | Hannenhalli, Sridhar | Day, Chi-Ping | ... | Ruppin, Eytan
Science Advances, volume 8, issue 31 (2022).
10.1126/sciadv.abj7176
Cited by (7) | Cite | Source
A Path-Based Analysis of Infected Cell Line and COVID-19 Patient Transcriptome Reveals Novel Potential Targets and Drugs Against SARS-CoV-2 (journal article)
Agrawal, Piyush | Sambaturu, Narmada | Olgun, Gulden | Hannenhalli, Sridhar
Frontiers in Immunology, volume 13 (2022).
10.3389/fimmu.2022.918817
Cited by (6) | Cite | Source
<i>De novo</i> Human Brain Enhancers Created by Single Nucleotide Mutations (journal article)
Li, Shan | Hannenhalli, Sridhar | Ovcharenko, Ivan
SSRN Electronic Journal (2022).
10.2139/ssrn.4076343
Cite | Source
A Transcriptionally Distinct Subpopulation of Healthy Acinar Cells Exhibit Features of Pancreatic Progenitors and PDAC (journal article)
Gopalan, Vishaka | Singh, Arashdeep | Rashidi Mehrabadi, Farid | Wang, Li | Ruppin, Eytan | Arda, H. Efsun | Hannenhalli, Sridhar
Cancer Research, volume 81, issue 15, pages 3958-3970 (2021).
10.1158/0008-5472.CAN-21-0427
Cited by (9) | Cite | Source
Prioritizing and characterizing functionally relevant genes across human tissues (journal article)
Somepalli, Gowthami | Sahoo, Sarthak | Singh, Arashdeep | Hannenhalli, Sridhar
PLOS Computational Biology, volume 17, issue 7, pages e1009194- (2021).
10.1371/journal.pcbi.1009194
Cited by (4) | Cite | Source
PathExt: a general framework for path-based mining of omics-integrated biological networks (journal article)
Sambaturu, Narmada | Pusadkar, Vaidehi | Hannenhalli, Sridhar | Chandra, Nagasuma
Bioinformatics, volume 37, issue 9, pages 1254-1262 (2021).
10.1093/bioinformatics/btaa941
Cited by (9) | Cite | Source