Stephen F. Altschul | Scholar Profiles and Rankings

Publications and Citation History

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NIH/NSF


eCOMPASS: evaluative comparison of multiple protein alignments by statistical score (journal article) Neuwald, Andrew F \| Kolaczkowski, Bryan D \| Altschul, Stephen F Bioinformatics, volume 37, issue 20, pages 3456-3463 (2021). 10.1093/bioinformatics/btab374 Cite \| Source
Deep Analysis of Residue Constraints (DARC): identifying determinants of protein functional specificity (journal article) Tondnevis, Farzaneh \| Dudenhausen, Elizabeth E. \| Miller, Andrew M. \| McKenna, Robert \| Altschul, Stephen F. \| Bloom, Linda B. \| Neuwald, Andrew F. Scientific Reports, volume 10, issue 1 (2020). 10.1038/s41598-019-55118-6 Cited by (9) \| Cite \| Source
Statistical investigations of protein residue direct couplings (journal article) Neuwald, Andrew F. \| Altschul, Stephen F. PLOS Computational Biology, volume 14, issue 12, pages e1006237- (2018). 10.1371/journal.pcbi.1006237 Cited by (6) \| Cite \| Source
Outlier detection in BLAST hits (journal article) Shah, Nidhi \| Altschul, Stephen F. \| Pop, Mihai Algorithms for Molecular Biology, volume 13, issue 1 (2018). 10.1186/s13015-018-0126-3 Cited by (9) \| Cite \| Source \| Open Access
Statistical Investigations of Protein Residue Direct Couplings (journal article) Neuwald, Andrew F. \| Altschul, Stephen F. bioRxiv (2018). 10.1101/334540 Cite \| Source \| Open Access
Initial Cluster Analysis (journal article) Altschul, Stephen F. \| Neuwald, Andrew F. Journal of Computational Biology, volume 25, issue 2, pages 121-129 (2018). 10.1089/cmb.2017.0050 Cited by (7) \| Cite \| Source \| Open Access
Inferring joint sequence-structural determinants of protein functional specificity (journal article) Neuwald, Andrew F \| Aravind, L \| Altschul, Stephen F eLife, volume 7 (2018). 10.7554/eLife.29880 Cited by (12) \| Cite \| Source \| Open Access
Outlier Detection in BLAST Hits (conference) Shah, Nidhi \| Altschul, Stephen F. \| Pop, Mihai Workshop on Algorithms in Bioinformatics (2017) 10.4230/LIPIcs.WABI.2017.23 Cited by (1) \| Cite \| Source
Inference of Functionally-Relevant N-acetyltransferase Residues Based on Statistical Correlations (journal article) Neuwald, Andrew F. \| Altschul, Stephen F. PLOS Computational Biology, volume 12, issue 12, pages e1005294- (2016). 10.1371/journal.pcbi.1005294 Cited by (7) \| Cite \| Source \| Open Access
Bayesian Top-Down Protein Sequence Alignment with Inferred Position-Specific Gap Penalties (journal article) Neuwald, Andrew F. \| Altschul, Stephen F. PLOS Computational Biology, volume 12, issue 5, pages e1004936- (2016). 10.1371/journal.pcbi.1004936 Cited by (15) \| Cite \| Source \| Open Access
Log-odds sequence logos (journal article) Yu, Yi-Kuo \| Capra, John A. \| Stojmirović, Aleksandar \| Landsman, David \| Altschul, Stephen F. Bioinformatics, volume 31, issue 3, pages 324-331 (2015). 10.1093/bioinformatics/btu634 Cited by (11) \| Cite \| Source \| Open Access
Erratum: The anatomy of successful computational biology software (journal article) Altschul, Stephen \| Demchak, Barry \| Durbin, Richard \| Gentleman, Robert \| Krzywinski, Martin \| Li, Heng \| Nekrutenko, Anton \| Robinson, James \| Rasband, Wayne \| Taylor, James \| Trapnell, Cole Nature Biotechnology, volume 32, issue 6, pages 592-592 (2014). 10.1038/nbt0614-592b Cited by (1) \| Cite \| Source \| Open Access
The anatomy of successful computational biology software (journal article) Altschul, Stephen \| Demchak, Barry \| Durbin, Richard \| Gentleman, Robert \| Krzywinski, Martin \| Li, Heng \| Nekrutenko, Anton \| Robinson, James \| Rasband, Wayne \| Taylor, James \| Trapnell, Cole Nature Biotechnology, volume 31, issue 10, pages 894-897 (2013). 10.1038/nbt.2721 Cited by (23) \| Cite \| Source \| Open Access
Substitution Matrices (book chapter) In eLS Altschul, Stephen F Wiley (2013) 10.1002/9780470015902.a0005265.pub3 Cite \| Source
Dirichlet Mixtures, the Dirichlet Process, and the Structure of Protein Space (journal article) Nguyen, Viet-An \| Boyd-Graber, Jordan \| Altschul, Stephen F. Journal of Computational Biology, volume 20, issue 1, pages 1-18 (2013). 10.1089/cmb.2012.0244 Cited by (27) \| Cite \| Source \| Open Access
Domain enhanced lookup time accelerated BLAST (journal article) Boratyn, Grzegorz M \| Schäffer, Alejandro A \| Agarwala, Richa \| Altschul, Stephen F \| Lipman, David J \| Madden, Thomas L Biology Direct, volume 7, issue 1, pages 12- (2012). 10.1186/1745-6150-7-12 Cited by (557) \| Cite \| Source \| Open Access
An assessment of substitution scores for protein profile–profile comparison (journal article) Ye, Xugang \| Wang, Guoli \| Altschul, Stephen F. Bioinformatics, volume 27, issue 24, pages 3356-3363 (2011). 10.1093/bioinformatics/btr565 Cited by (8) \| Cite \| Source \| Open Access
On the Inference of Dirichlet Mixture Priors for Protein Sequence Comparison (journal article) Ye, Xugang \| Yu, Yi-Kuo \| Altschul, Stephen F. Journal of Computational Biology, volume 18, issue 8, pages 941-954 (2011). 10.1089/cmb.2011.0040 Cited by (5) \| Cite \| Source \| Open Access
The Complexity of the Dirichlet Model for Multiple Alignment Data (journal article) Yu, Yi-Kuo \| Altschul, Stephen F. Journal of Computational Biology, volume 18, issue 8, pages 925-939 (2011). 10.1089/cmb.2011.0039 Cited by (3) \| Cite \| Source \| Open Access
Compositional Adjustment of Dirichlet Mixture Priors (journal article) Ye, Xugang \| Yu, Yi-Kuo \| Altschul, Stephen F. Journal of Computational Biology, volume 17, issue 12, pages 1607-1620 (2010). 10.1089/cmb.2010.0117 Cited by (9) \| Cite \| Source \| Open Access

Title	Investigators	Year	Cost	Agency
Improvements and Extensions to the BLAST Algorithms	Altschul, Stephen F	2019	$2,377	NATIONAL LIBRARY OF MEDICINE
Statistics of Sequence Comparison	Altschul, Stephen F	2019	$235,300	NATIONAL LIBRARY OF MEDICINE
Improvements and Extensions to the BLAST Algorithms	Altschul, Stephen F	2018	$22,549	NATIONAL LIBRARY OF MEDICINE
Statistics of Sequence Comparison	Altschul, Stephen F	2018	$202,937	NATIONAL LIBRARY OF MEDICINE
Improvements and Extensions to the BLAST Algorithms	Altschul, Stephen F	2017	$21,417	NATIONAL LIBRARY OF MEDICINE
Statistics of Sequence Comparison	Altschul, Stephen F	2017	$192,751	NATIONAL LIBRARY OF MEDICINE
Statistics of Sequence Comparison	Altschul, Stephen F	2016	$212,707	NATIONAL LIBRARY OF MEDICINE
Statistics of Sequence Comparison	Altschul, Stephen F	2015	$204,514	NATIONAL LIBRARY OF MEDICINE
Improvements and Extensions to the BLAST Algorithms	Altschul, Stephen F	2014	$33,276	NATIONAL LIBRARY OF MEDICINE
Statistics of Sequence Comparison	Altschul, Stephen F	2014	$228,773	NATIONAL LIBRARY OF MEDICINE
Statistics of Sequence Comparison	Altschul, Stephen F	2013	$217,791	NATIONAL LIBRARY OF MEDICINE
Improvements and Extensions to the BLAST Algorithms	Altschul, Stephen F	2013	$106,841	NATIONAL LIBRARY OF MEDICINE
Improvements and Extensions to the BLAST Algorithms	Altschul, Stephen F	2012	$177,875	NATIONAL LIBRARY OF MEDICINE
Statistics of Sequence Comparison	Altschul, Stephen F	2012	$260,305	NATIONAL LIBRARY OF MEDICINE
Improvements and Extensions to the BLAST Algorithms	Altschul, Stephen F	2011	$59,961	NATIONAL LIBRARY OF MEDICINE
Statistics of Sequence Comparison	Altschul, Stephen F	2011	$409,736	NATIONAL LIBRARY OF MEDICINE
Improvements and Extensions to the BLAST Algorithms	Altschul, Stephen F	2010	$50,926	NATIONAL LIBRARY OF MEDICINE
Statistics of Sequence Comparison	Altschul, Stephen F	2010	$391,740	NATIONAL LIBRARY OF MEDICINE
Improvements and Extensions to the BLAST Algorithms	Altschul, Stephen F	2009	$66,342	NATIONAL LIBRARY OF MEDICINE
Statistics of Sequence Comparison	Altschul, Stephen F	2009	$156,641	NATIONAL LIBRARY OF MEDICINE
Improvements And Extensions To The Blast Algorithms	Altschul, Stephen F	2008	$231,056	NATIONAL LIBRARY OF MEDICINE
Statistics Of Sequence Comparison	Altschul, Stephen F	2008	$131,047	NATIONAL LIBRARY OF MEDICINE
Statistics Of Sequence Comparison	Altschul, Stephen F	2007	$194,193	NATIONAL LIBRARY OF MEDICINE
Improvements And Extensions To The Blast Algorithms	Altschul, Stephen F	2007	$264,808	NATIONAL LIBRARY OF MEDICINE