Kristoffer Sahlin

ScholarGPS® ID: 87022544071078

Highly Ranked Scholar - Prior Five Years:

#15

Transcriptome

Affiliation

Stockholm University, Stockholm, Sweden

Affiliation History

Field

Physical Sciences and Mathematics

Discipline

Mathematics

Top Specialties

Computational Biology | Scaffolding | Transcriptome

Metrics Summary

Publication Count

Predicted Citations

652

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

Add Delete
Designing efficient randstrobes for sequence similarity analyses (journal article) Karami, Moein \| Soltani Mohammadi, Aryan \| Martin, Marcel \| Ekim, Barış \| Shen, Wei \| Guo, Lidong \| Xu, Mengyang \| Pibiri, Giulio Ermanno \| Patro, Rob \| Sahlin, Kristoffer Bioinformatics, volume 40, issue 4 (2024). 10.1093/bioinformatics/btae187 Cite \| Source
Efficient mapping of accurate long reads in minimizer space with mapquik (journal article) Ekim, Bariş \| Sahlin, Kristoffer \| Medvedev, Paul \| Berger, Bonnie \| Chikhi, Rayan Genome Research (2023). 10.1101/gr.277679.123 Cited by (2) \| Cite \| Source
isONform: reference-free transcriptome reconstruction from Oxford Nanopore data (journal article) Petri, Alexander J \| Sahlin, Kristoffer Bioinformatics, volume 39, issue Supplement_1, pages i222-i231 (2023). 10.1093/bioinformatics/btad264 Cited by (2) \| Cite \| Source
A survey of mapping algorithms in the long-reads era (journal article) Sahlin, Kristoffer \| Baudeau, Thomas \| Cazaux, Bastien \| Marchet, Camille Genome Biology, volume 24, issue 1 (2023). 10.1186/s13059-023-02972-3 Cited by (12) \| Cite \| Source
Entropy predicts sensitivity of pseudorandom seeds (journal article) Maier, Benjamin Dominik \| Sahlin, Kristoffer Genome Research (2023). 10.1101/gr.277645.123 Cite \| Source
Strobealign: flexible seed size enables ultra-fast and accurate read alignment (journal article) Sahlin, Kristoffer Genome Biology, volume 23, issue 1 (2022). 10.1186/s13059-022-02831-7 Cited by (13) \| Cite \| Source
Rapid in situ identification of biological specimens via DNA amplicon sequencing using miniaturized laboratory equipment (journal article) Pomerantz, Aaron \| Sahlin, Kristoffer \| Vasiljevic, Nina \| Seah, Adeline \| Lim, Marisa \| Humble, Emily \| Kennedy, Susan \| Krehenwinkel, Henrik \| Winter, Sven \| Ogden, Rob \| Prost, Stefan Nature Protocols, volume 17, issue 6, pages 1415-1443 (2022). 10.1038/s41596-022-00682-x Cited by (19) \| Cite \| Source
Accurate spliced alignment of long RNA sequencing reads (journal article) Sahlin, Kristoffer \| Mäkinen, Veli Bioinformatics, volume 37, issue 24, pages 4643-4651 (2021). 10.1093/bioinformatics/btab540 Cited by (24) \| Cite \| Source
Effective sequence similarity detection with strobemers (journal article) Sahlin, Kristoffer Genome Research, volume 31, issue 11, pages 2080-2094 (2021). 10.1101/gr.275648.121 Cited by (26) \| Cite \| Source
NGSpeciesID: DNA barcode and amplicon consensus generation from long‐read sequencing data (journal article) Sahlin, Kristoffer \| Lim, Marisa C. W. \| Prost, Stefan Ecology and Evolution, volume 11, issue 3, pages 1392-1398 (2021). 10.1002/ece3.7146 Cited by (29) \| Cite \| Source
Error correction enables use of Oxford Nanopore technology for reference-free transcriptome analysis (journal article) Sahlin, Kristoffer \| Medvedev, Paul Nature Communications, volume 12, issue 1 (2021). 10.1038/s41467-020-20340-8 Cited by (82) \| Cite \| Source
Safety in multi-assembly via paths appearing in all path covers of a DAG (journal article) Caceres, Manuel \| Mumey, Brendan \| Husic, Edin \| Rizzi, Romeo \| Cairo, Massimo \| Sahlin, Kristoffer \| Tomescu, Alexandru I. Ioan IEEE/ACM Transactions on Computational Biology and Bioinformatics (2021). 10.1109/TCBB.2021.3131203 Cited by (2) \| Cite \| Source
De Novo Clustering of Long-Read Transcriptome Data Using a Greedy, Quality Value-Based Algorithm (journal article) Sahlin, Kristoffer \| Medvedev, Paul Journal of Computational Biology, volume 27, issue 4, pages 472-484 (2020). 10.1089/cmb.2019.0299 Cited by (40) \| Cite \| Source
DiscoverY: a classifier for identifying Y chromosome sequences in male assemblies (journal article) Rangavittal, Samarth \| Stopa, Natasha \| Tomaszkiewicz, Marta \| Sahlin, Kristoffer \| Makova, Kateryna D. \| Medvedev, Paul BMC Genomics, volume 20, issue 1 (2019). 10.1186/s12864-019-5996-3 Cited by (14) \| Cite \| Source
De Novo Clustering of Long-Read Transcriptome Data Using a Greedy, Quality-Value Based Algorithm (book chapter) In Research in Computational Molecular Biology Sahlin, Kristoffer \| Medvedev, Paul Springer International Publishing (2019) 10.1007/978-3-030-17083-7_14 Cited by (10) \| Cite \| Source
De novo clustering of long-read transcriptome data using a greedy, quality-value based algorithm (journal article) Sahlin, Kristoffer \| Medvedev, Paul bioRxiv (2018). 10.1101/463463 Cited by (8) \| Cite \| Source
Deciphering highly similar multigene family transcripts from Iso-Seq data with IsoCon (journal article) Sahlin, Kristoffer \| Tomaszkiewicz, Marta \| Makova, Kateryna D. \| Medvedev, Paul Nature Communications, volume 9, issue 1 (2018). 10.1038/s41467-018-06910-x Cited by (41) \| Cite \| Source
IsoCon: Deciphering highly similar multigene family transcripts from Iso-Seq data (journal article) Sahlin, Kristoffer \| Tomaszkiewicz, Marta \| Makova, Kateryna D. \| Medvedev, Paul bioRxiv (2018). 10.1101/246066 Cite \| Source \| Open Access
Structural Variation Detection with Read Pair Information: An Improved Null Hypothesis Reduces Bias (journal article) Sahlin, Kristoffer \| Frånberg, Mattias \| Arvestad, Lars Journal of Computational Biology, volume 24, issue 6, pages 581-589 (2017). 10.1089/cmb.2016.0124 Cited by (2) \| Cite \| Source
Assembly scaffolding with PE-contaminated mate-pair libraries (journal article) Sahlin, Kristoffer \| Chikhi, Rayan \| Arvestad, Lars Bioinformatics, volume 32, issue 13, pages 1925-1932 (2016). 10.1093/bioinformatics/btw064 Cited by (35) \| Cite \| Source \| Open Access