Shuichi Onami

ScholarGPS® ID: 86119909281842

Affiliation

RIKEN Center for Biosystems Dynamics Research, Japan

Affiliation History

Field

Life Sciences

Discipline

Biology and Biological Sciences

Top Specialties

Metrics Summary

Publication Count

Predicted Citations

880

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Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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An atlas and database of neuropeptide gene expression in the adult zebrafish forebrain (journal article) Hiraki‐Kajiyama, Towako \| Miyasaka, Nobuhiko \| Ando, Reiko \| Wakisaka, Noriko \| Itoga, Hiroya \| Onami, Shuichi \| Yoshihara, Yoshihiro Journal of Comparative Neurology, volume 532, issue 6 (2024). 10.1002/cne.25619 Cite \| Source
Homeostasis imbalance process ontology: a study on COVID-19 infectious processes (journal article) Yamagata, Yuki \| Kushida, Tatsuya \| Onami, Shuichi \| Masuya, Hiroshi BMC Medical Informatics and Decision Making, volume 23, issue S4 (2024). 10.1186/s12911-024-02516-0 Cite \| Source
Single‐molecule tracking of Nanog and Oct4 in living mouse embryonic stem cells uncovers a feedback mechanism of pluripotency maintenance (journal article) Okamoto, Kazuko \| Fujita, Hideaki \| Okada, Yasushi \| Shinkai, Soya \| Onami, Shuichi \| Abe, Kuniya \| Fujimoto, Kenta \| Sasaki, Kensuke \| Shioi, Go \| Watanabe, Tomonobu M The EMBO Journal, volume 42, issue 18 (2023). 10.15252/embj.2022112305 Cited by (1) \| Cite \| Source
Condensed but liquid-like domain organization of active chromatin regions in living human cells (journal article) Nozaki, Tadasu \| Shinkai, Soya \| Ide, Satoru \| Higashi, Koichi \| Tamura, Sachiko \| Shimazoe, Masa A. \| Nakagawa, Masaki \| Suzuki, Yutaka \| Okada, Yasushi \| Sasai, Masaki \| ... \| Maeshima, Kazuhiro Science Advances, volume 9, issue 14 (2023). 10.1126/sciadv.adf1488 Cited by (29) \| Cite \| Source
Systematic analysis of cell morphodynamics in C. elegans early embryogenesis (journal article) Azuma, Yusuke \| Okada, Hatsumi \| Onami, Shuichi Frontiers in Bioinformatics, volume 3 (2023). 10.3389/fbinf.2023.1082531 Cited by (1) \| Cite \| Source
Single-nucleosome imaging reveals steady-state motion of interphase chromatin in living human cells (journal article) Iida, Shiori \| Shinkai, Soya \| Itoh, Yuji \| Tamura, Sachiko \| Kanemaki, Masato T. \| Onami, Shuichi \| Maeshima, Kazuhiro Science Advances, volume 8, issue 22 (2022). 10.1126/sciadv.abn5626 Cited by (20) \| Cite \| Source
The PAF1 complex cell autonomously promotes oogenesis in Caenorhabditis elegans (journal article) Kubota, Yukihiro \| Ota, Natsumi \| Takatsuka, Hisashi \| Unno, Takuma \| Onami, Shuichi \| Sugimoto, Asako \| Ito, Masahiro Genes to Cells, volume 27, issue 6, pages 409-420 (2022). 10.1111/gtc.12938 Cited by (3) \| Cite \| Source
Phenotype Anomaly Detection for Biological Dynamics Data Using a Deep Generative Model (book chapter) In Artificial Neural Networks and Machine Learning – ICANN 2022 Ito, Eisuke \| Ueda, Takaya \| Takano, Ryo \| Tohsato, Yukako \| Kyoda, Koji \| Onami, Shuichi \| Nishikawa, Ikuko Springer Nature Switzerland (2022) 10.1007/978-3-031-15931-2_36 Cite \| Source
Statistical image processing quantifies the changes in cytoplasmic texture associated with aging in Caenorhabditis elegans oocytes (journal article) Imakubo, Momoko \| Takayama, Jun \| Okada, Hatsumi \| Onami, Shuichi BMC Bioinformatics, volume 22, issue 1 (2021). 10.1186/s12859-021-03990-3 Cited by (8) \| Cite \| Source
A global view of standards for open image data formats and repositories (journal article) Swedlow, Jason R. \| Kankaanpää, Pasi \| Sarkans, Ugis \| Goscinski, Wojtek \| Galloway, Graham \| Malacrida, Leonel \| Sullivan, Ryan P. \| Härtel, Steffen \| Brown, Claire M. \| Wood, Christopher \| ... \| Onami, Shuichi Nature Methods, volume 18, issue 12, pages 1440-1446 (2021). 10.1038/s41592-021-01113-7 Cited by (33) \| Cite \| Source
NeuroGT: A brain atlas of neurogenic tagging CreER drivers for birthdate-based classification and manipulation of mouse neurons (journal article) Hirata, Tatsumi \| Tohsato, Yukako \| Itoga, Hiroya \| Shioi, Go \| Kiyonari, Hiroshi \| Oka, Sanae \| Fujimori, Toshihiko \| Onami, Shuichi Cell Reports Methods, volume 1, issue 3, pages 100012- (2021). 10.1016/j.crmeth.2021.100012 Cited by (5) \| Cite \| Source
Improvement in image quality via the pseudo confocal effect in multidirectional digital scanned laser light-sheet microscopy (journal article) Kaneshiro, Junichi \| Shioi, Go \| Okamoto, Kazuko \| Onami, Shuichi \| Watanabe, Tomonobu M. Optics Express, volume 29, issue 15, pages 24278- (2021). 10.1364/OE.423783 Cited by (1) \| Cite \| Source
Texture-Based Screening to Identify Genes Involved in Reproductive Aging in Caenorhabditis Elegans (journal article) Imakubo, Momoko \| Kyoda, Koji \| Itoga, Hiroya \| Takayama, Jun \| Onami, Shuichi International Journal of Bioscience, Biochemistry and Bioinformatics, volume 11, issue 3, pages 40-49 (2021). 10.17706/ijbbb.2021.11.3.40-49 Cite \| Source
BD5: An open HDF5-based data format to represent quantitative biological dynamics data (journal article) Kyoda, Koji \| Ho, Kenneth H. L. \| Tohsato, Yukako \| Itoga, Hiroya \| Onami, Shuichi PLOS ONE, volume 15, issue 8, pages e0237468- (2020). 10.1371/journal.pone.0237468 Cited by (4) \| Cite \| Source
PHi-C: deciphering Hi-C data into polymer dynamics (journal article) Shinkai, Soya \| Nakagawa, Masaki \| Sugawara, Takeshi \| Togashi, Yuichi \| Ochiai, Hiroshi \| Nakato, Ryuichiro \| Taniguchi, Yuichi \| Onami, Shuichi NAR Genomics and Bioinformatics, volume 2, issue 2 (2020). 10.1093/nargab/lqaa020 Cited by (27) \| Cite \| Source
Microrheology for Hi-C Data Reveals the Spectrum of the Dynamic 3D Genome Organization (journal article) Shinkai, Soya \| Sugawara, Takeshi \| Miura, Hisashi \| Hiratani, Ichiro \| Onami, Shuichi Biophysical Journal, volume 118, issue 9, pages 2220-2228 (2020). 10.1016/j.bpj.2020.02.020 Cited by (11) \| Cite \| Source
Visualization of Spatiotemporal Biosystems Dynamics Information (journal article) Kyoda, Koji \| H.L. HO, Kenneth \| Itoga, Hiroya \| Tohsato, Yukako \| Onami, Shuichi Journal of the Visualization Society of Japan, volume 40, issue 156, pages 25-28 (2020). 10.3154/jvs.40.156_25 Cite \| Source
Toward understanding the dynamic state of 3D genome (journal article) Shinkai, Soya \| Onami, Shuichi \| Nakato, Ryuichiro Computational and Structural Biotechnology Journal, volume 18 (2020). 10.1016/j.csbj.2020.08.014 Cited by (4) \| Cite \| Source
Development of an Integrated Visualization System for Phenotypic Character Networks (conference) Onoue, Yosuke \| Kyoda, Koji \| Kioka, Miki \| Baba, Kazutaka \| Onami, Shuichi \| Koyamada, Koji 2018 IEEE Pacific Visualization Symposium (PacificVis) (2018) Kobe 10.1109/PacificVis.2018.00012 Cited by (3) \| Cite \| Source
Improvement and Evaluation of a Mathematical Model for Fertilization Calcium Waves in <i>Caenorhabditis Elegans</i> (journal article) Imakubo, Momoko \| Takayama, Jun \| Onami, Shuichi IPSJ Transactions on Bioinformatics, volume 11 (2018). 10.2197/ipsjtbio.11.24 Cite \| Source \| Open Access