Raunaq Malhotra

ScholarGPS® ID: 85249433382414

Affiliation

Pennsylvania State University, University Park, United States

Affiliation History

Field

Engineering and Computer Science

Discipline

Computer Science

Top Specialties

Bioinformatics | Computational Biology

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Publication Count

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Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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ViPRA-Haplo: De Novo Reconstruction of Viral Populations Using Paired End Sequencing Data (journal article) Li, Weiling \| Malhotra, Raunaq \| Wu, Steven \| Jha, Manjari \| Rodrigo, Allen \| Poss, Mary \| Acharya, Raj IEEE/ACM Transactions on Computational Biology and Bioinformatics, volume 21, issue 3, pages 492-500 (2024). 10.1109/TCBB.2024.3374595 Cite \| Source
Recombination Marks the Evolutionary Dynamics of a Recently Endogenized Retrovirus (journal article) Yang, Lei \| Malhotra, Raunaq \| Chikhi, Rayan \| Elleder, Daniel \| Kaiser, Theodora \| Rong, Jesse \| Medvedev, Paul \| Poss, Mary Molecular Biology and Evolution, volume 38, issue 12, pages 5423-5436 (2021). 10.1093/molbev/msab252 Cited by (2) \| Cite \| Source
System and method for dynamic control of workflow execution (patent) Frech, Christian \| Malhotra, Raunaq Patent Number: 10678613 (2020) Cited by (1) \| Cite \| Source
QuagmiR: a cloud-based application for isomiR big data analytics (journal article) Bofill-De Ros, Xavier \| Chen, Kevin \| Chen, Susanna \| Tesic, Nikola \| Randjelovic, Dusan \| Skundric, Nikola \| Nesic, Svetozar \| Varjacic, Vojislav \| Williams, Elizabeth H \| Malhotra, Raunaq \| ... \| Gu, Shuo Bioinformatics, volume 35, issue 9, pages 1576-1578 (2019). 10.1093/bioinformatics/bty843 Cited by (20) \| Cite \| Source
A computational framework to assess genome-wide distribution of polymorphic human endogenous retrovirus-K In human populations (journal article) Li, Weiling \| Lin, Lin \| Malhotra, Raunaq \| Yang, Lei \| Acharya, Raj \| Poss, Mary PLOS Computational Biology, volume 15, issue 3, pages e1006564- (2019). 10.1371/journal.pcbi.1006564 Cited by (21) \| Cite \| Source
A Computational Framework To Assess Genome-Wide Distribution Of Polymorphic Human Endogenous Retrovirus-K In Human Populations (journal article) Li, Weiling \| Lin, Lin \| Malhotra, Raunaq \| Yang, Lei \| Acharya, Raj \| Poss, Mary bioRxiv (2018). 10.1101/444034 Cite \| Source
Using the Seven Bridges Cancer Genomics Cloud to Access and Analyze Petabytes of Cancer Data (journal article) Malhotra, Raunaq \| Seth, Isheeta \| Lehnert, Erik \| Zhao, Jing \| Kaushik, Gaurav \| Williams, Elizabeth H. \| Sethi, Anurag \| Davis‐Dusenbery, Brandi N. Current Protocols in Bioinformatics, volume 60, issue 1 (2017). 10.1002/cpbi.39 Cited by (4) \| Cite \| Source
A Generalized Lattice Based Probabilistic Approach for Metagenomic Clustering (journal article) Jha, Manjari \| Malhotra, Raunaq \| Acharya, Raj IEEE/ACM Transactions on Computational Biology and Bioinformatics, volume 14, issue 4, pages 749-761 (2017). 10.1109/TCBB.2016.2563422 Cited by (1) \| Cite \| Source \| Open Access
A random forest classifier for detecting rare variants in NGS data from viral populations (journal article) Malhotra, Raunaq \| Jha, Manjari \| Poss, Mary \| Acharya, Raj Computational and Structural Biotechnology Journal, volume 15 (2017). 10.1016/j.csbj.2017.07.001 Cited by (5) \| Cite \| Source \| Open Access
Error correction and statistical analyses for intra-host comparisons of feline immunodeficiency virus diversity from high-throughput sequencing data (journal article) Liu, Yang \| Chiaromonte, Francesca \| Ross, Howard \| Malhotra, Raunaq \| Elleder, Daniel \| Poss, Mary BMC Bioinformatics, volume 16, issue 1 (2015). 10.1186/s12859-015-0607-z Cited by (2) \| Cite \| Source \| Open Access
A generalized lattice model for clustering metagenomic sequences (conference) Mukhopadhyay, Manjari \| Malhotra, Raunaq \| Acharya, Raj BCB '15: ACM International Conference on Bioinformatics, Computational Biology and Biomedicine (2015) Atlanta Georgia 10.1145/2808719.2814843 Cited by (1) \| Cite \| Source
Computational and Statistical Analyses of Insertional Polymorphic Endogenous Retroviruses in a Non-Model Organism (journal article) Bao, Le \| Elleder, Daniel \| Malhotra, Raunaq \| DeGiorgio, Michael \| Maravegias, Theodora \| Horvath, Lindsay \| Carrel, Laura \| Gillin, Colin \| Hron, Tomáš \| Fábryová, Helena \| ... \| Poss, Mary Computation, volume 2, issue 4, pages 221-245 (2014). 10.3390/computation2040221 Cited by (4) \| Cite \| Source \| Open Access
Mutant-Bin: Unsupervised Haplotype Estimation of Viral Population Diversity Without Reference Genome (journal article) Prabhakara, Shruthi \| Malhotra, Raunaq \| Acharya, Raj \| Poss, Mary Journal of Computational Biology, volume 20, issue 6, pages 453-463 (2013). 10.1089/cmb.2012.0174 Cited by (7) \| Cite \| Source
Estimating Viral Haplotypes in a Population Using k-mer Counting (book chapter) In Pattern Recognition in Bioinformatics Malhotra, Raunaq \| Prabhakara, Shruthi \| Poss, Mary \| Acharya, Raj Springer Berlin Heidelberg (2013) 10.1007/978-3-642-39159-0_24 Cited by (3) \| Cite \| Source \| Open Access
Predicting V(D)J Recombination Using Conditional Random Fields (book chapter) In Pattern Recognition in Bioinformatics Malhotra, Raunaq \| Prabhakara, Shruthi \| Acharya, Raj Springer Berlin Heidelberg (2012) 10.1007/978-3-642-34123-6_19 Cited by (1) \| Cite \| Source \| Open Access