James H. Kaufman

ScholarGPS® ID: 84129870287142

Affiliation

International Business Machines Corporation, Armonk, New York, United States

Affiliation History

Field

Engineering and Computer Science

Discipline

Computer Science

Top Specialties

Metrics Summary

Publication Count

127

Predicted Citations

5,937

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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Agent Simulation Using Path Telemetry for Modeling COVID-19 Workplace Hazard and Risk (conference) Beymer, David \| Mukherjee, Vandana \| Pillai, Anup \| Bulu, Hakan \| Burrowes, Vanessa \| Kaufman, James \| Seabolt, Ed 15th International Conference on Bioinformatics Models, Methods and Algorithms (2024) Rome, Italy 10.5220/0012322400003657 Cite \| Source
ggMOB: Elucidation of genomic conjugative features and associated cargo genes across bacterial genera using genus-genus mobilization networks (journal article) Nayar, Gowri \| Terrizzano, Ignacio \| Seabolt, Ed \| Agarwal, Akshay \| Boucher, Christina \| Ruiz, Jaime \| Slizovskiy, Ilya B. \| Kaufman, James H. \| Noyes, Noelle R. Frontiers in Genetics, volume 13 (2022). 10.3389/fgene.2022.1024577 Cite \| Source
Predicting Epitope Candidates for SARS-CoV-2 (journal article) Agarwal, Akshay \| Beck, Kristen L. \| Capponi, Sara \| Kunitomi, Mark \| Nayar, Gowri \| Seabolt, Edward \| Mahadeshwar, Gandhar \| Bianco, Simone \| Mukherjee, Vandana \| Kaufman, James H. Viruses, volume 14, issue 8, pages 1837- (2022). 10.3390/v14081837 Cited by (4) \| Cite \| Source
Functional Genomics Platform, A Cloud-Based Platform for Studying Microbial Life at Scale (journal article) Seabolt, Edward E. \| Nayar, Gowri \| Krishnareddy, Harsha \| Agarwal, Akshay \| Beck, Kristen L. \| Terrizzano, Ignacio \| Kandogan, Eser \| Kunitomi, Mark \| Roth, Mary \| Mukherjee, Vandana \| Kaufman, James H. IEEE/ACM Transactions on Computational Biology and Bioinformatics, volume 19, issue 2, pages 940-952 (2022). 10.1109/TCBB.2020.3021231 Cited by (11) \| Cite \| Source
Semi-Supervised Pipeline for Autonomous Annotation of SARS-CoV-2 Genomes (journal article) Beck, Kristen L. \| Seabolt, Edward \| Agarwal, Akshay \| Nayar, Gowri \| Bianco, Simone \| Krishnareddy, Harsha \| Ngo, Timothy A. \| Kunitomi, Mark \| Mukherjee, Vandana \| Kaufman, James H. Viruses, volume 13, issue 12, pages 2426- (2021). 10.3390/v13122426 Cited by (5) \| Cite \| Source
Re-purposing software for functional characterization of the microbiome (journal article) Gardiner, Laura-Jayne \| Haiminen, Niina \| Utro, Filippo \| Parida, Laxmi \| Seabolt, Ed \| Krishna, Ritesh \| Kaufman, James H. Microbiome, volume 9, issue 1 (2021). 10.1186/s40168-020-00971-1 Cited by (7) \| Cite \| Source
A comparative analysis of two unrelated outbreaks in Latvia and Australia of acquired idiopathic megaesophagus in dogs fed two brands of commercial dry dog foods: 398 cases (2014–2018) (journal article) Hurley, Karyl J. \| Mansfield, Caroline \| VanHoutan, Ilze Matīse \| Lacorcia, Lauren \| Allenspach, Karin \| Hebbard, Geoffrey \| Marks, Stanley L. \| Poppenga, Robert \| Kaufman, James H. \| Weimer, Bart C. \| ... \| Naar, Jerome Journal of the American Veterinary Medical Association, volume 259, issue 2, pages 172-183 (2021). 10.2460/javma.259.2.172 Cited by (3) \| Cite \| Source
Erratum for Miller et al., “Phylogenetic and Biogeographic Patterns of Vibrio parahaemolyticus Strains from North America Inferred from Whole-Genome Sequence Data” (journal article) Miller, John J. \| Weimer, Bart C. \| Timme, Ruth \| Lüdeke, Catharina H. M. \| Pettengill, James B. \| Bandoy, DJ Darwin \| Weis, Allison M. \| Kaufman, James \| Huang, B. Carol \| Payne, Justin \| ... \| Jones, Jessica L. Applied and Environmental Microbiology, volume 87, issue 12 (2021). 10.1128/AEM.00693-21 Cited by (4) \| Cite \| Source
Analysis and forecasting of global real time RT-PCR primers and probes for SARS-CoV-2 (journal article) Nayar, Gowri \| Seabolt, Edward E. \| Kunitomi, Mark \| Agarwal, Akshay \| Beck, Kristen L. \| Mukherjee, Vandana \| Kaufman, James H. Scientific Reports, volume 11, issue 1 (2021). 10.1038/s41598-021-88532-w Cited by (11) \| Cite \| Source
Phylogenetic and Biogeographic Patterns of Vibrio parahaemolyticus Strains from North America Inferred from Whole-Genome Sequence Data (journal article) Miller, John J. \| Weimer, Bart C. \| Timme, Ruth \| Lüdeke, Catharina H. M. \| Pettengill, James B. \| Bandoy, D. J. Darwin \| Weis, Allison M. \| Kaufman, James \| Huang, B. Carol \| Payne, Justin \| ... \| Jones, Jessica L. Applied and Environmental Microbiology, volume 87, issue 3 (2021). 10.1128/AEM.01403-20 Cited by (12) \| Cite \| Source
Hierarchically Labeled Database Indexing Allows Scalable Characterization of Microbiomes (journal article) Utro, Filippo \| Haiminen, Niina \| Siragusa, Enrico \| Gardiner, Laura-Jayne \| Seabolt, Ed \| Krishna, Ritesh \| Kaufman, James H. \| Parida, Laxmi iScience, volume 23, issue 4, pages 100988- (2020). 10.1016/j.isci.2020.100988 Cited by (5) \| Cite \| Source
Proactive simulation and detection of outbreaks based on product data (patent) Davis, Matthew Aaron \| Edlund, Stefan Bengt \| Kun, Hu \| Kaufman, James H. \| Renly, Sondra Ronee \| Dörr, Daniel Patent Number: 10607174 (2020) Cite \| Source
System and method to search and verify borrower information using banking and investment account data and process to systematically share information with lenders and government sponsored agencies for (patent) Loganathan, Ravi \| Alcorn, Ronald Scott \| Letterly, Sandra \| Kaufman, James \| Weinflash, Laura Patent Number: 10607284 (2020) Cite \| Source
Survey of public assay data (conference) Agarwal, Akshay \| Nayar, Gowri \| Kaufman, James SAC '20: The 35th ACM/SIGAPP Symposium on Applied Computing (2020) Brno Czech Republic 10.1145/3341105.3374087 Cite \| Source
Insular Microbiogeography: Three Pathogens as Exemplars (journal article) Kaufman, James H. \| Elkins, Christopher A. \| Davis, Matthew \| Weis, Allison M. \| Huang, Bihua C. \| Mammel, Mark K. \| Patel, Isha R. \| Beck, Kristen L. \| Edlund, Stefan \| Chambliss, David \| ... \| Weimer, Bart C. Current Issues in Molecular Biology (2020). 10.21775/cimb.036.089 Cited by (3) \| Cite \| Source
System and method to search and verify borrower information using banking and investment account data and process to systematically share information with lenders and government sponsored agencies for (patent) Loganathan, Ravi \| Alcorn, Ronald Scott \| Letterly, Sandra \| Kaufman, James \| Weinflash, Laura Patent Number: 10504174 (2019) Cite \| Source
Food authentication from shotgun sequencing reads with an application on high protein powders (journal article) Haiminen, Niina \| Edlund, Stefan \| Chambliss, David \| Kunitomi, Mark \| Weimer, Bart C. \| Ganesan, Balasubramanian \| Baker, Robert \| Markwell, Peter \| Davis, Matthew \| Huang, B. Carol \| ... \| Beck, Kristen L. npj Science of Food, volume 3, issue 1 (2019). 10.1038/s41538-019-0056-6 Cited by (29) \| Cite \| Source
Exploiting Functional Context in Biology: Reconsidering Classification of Bacterial Life (conference) Kaufman, James H. \| Seabolt, Ed \| Kunitomi, Mark \| Agarwal, Akshay \| Beck, Kristen \| Krishnareddy, Harsha \| Weimer, Bart C. 2018 IEEE 34th International Conference on Data Engineering Workshops (ICDEW) (2018) Paris 10.1109/ICDEW.2018.00009 Cited by (2) \| Cite \| Source
Draft Genome Sequences of 1,183 Salmonella Strains from the 100K Pathogen Genome Project (journal article) Kong, Nguyet \| Davis, Matthew \| Arabyan, Narine \| Huang, Bihua C. \| Weis, Allison M. \| Chen, Poyin \| Thao, Kao \| Ng, Whitney \| Chin, Ning \| Foutouhi, Soraya \| ... \| Weimer, Bart C. Genome Announcements, volume 5, issue 28 (2017). 10.1128/genomeA.00518-17 Cited by (8) \| Cite \| Source \| Open Access
Query-driven virtual social network group (patent) Edlund, Stefan B. \| Hu, Kun \| Kaufman, James H. Patent Number: 9602607 (2017) Cite \| Source