Danica Wiredja

ScholarGPS® ID: 83354095434769

Affiliation

Stanford University, Stanford, United States

Affiliation History

Field

Medicine

Discipline

Pathology

Top Specialties

Computational Biology | Phosphoproteomics

Metrics Summary

Publication Count

Predicted Citations

435

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

Add Delete
A spurious positive result on the Abbott Architect 4th generation HIV Ag/Ab combo assay in a low-risk patient (journal article) Pepper, Michael A. \| Wiredja, Danica D. \| Patel, Payal M. \| Stevens, Bryan A. \| Pinsky, Benjamin A. \| Shi, Run-Zhang Clinica Chimica Acta, volume 531 (2022). 10.1016/j.cca.2022.05.004 Cite \| Source
Performance evaluation and optimized reporting workflow for HIV diagnostic screening and confirmatory tests in a low prevalence setting (journal article) Wiredja, Danica \| Ritchie, Todd A \| Tam, Gordon \| Hogan, Catherine A \| Pinsky, Benjamin \| Shi, Run Zhang Journal of Clinical Virology, volume 145 (2021). 10.1016/j.jcv.2021.105020 Cited by (6) \| Cite \| Source
Case-Control Study of Individuals with Discrepant Nucleocapsid and Spike Protein SARS-CoV-2 IgG Results (journal article) Wang, Hannah \| Wiredja, Danica \| Yang, Lu \| Bulterys, Philip L \| Costales, Cristina \| Röltgen, Katharina \| Manalac, Justin \| Yee, Jennifer \| Zehnder, James \| Shi, Run Zhang \| ... \| Pinsky, Benjamin A Clinical Chemistry, volume 67, issue 7, pages 977-986 (2021). 10.1093/clinchem/hvab045 Cited by (7) \| Cite \| Source
Selective PP2A Enhancement through Biased Heterotrimer Stabilization (journal article) Leonard, Daniel \| Huang, Wei \| Izadmehr, Sudeh \| O’Connor, Caitlin M. \| Wiredja, Danica D. \| Wang, Zhizhi \| Zaware, Nilesh \| Chen, Yinghua \| Schlatzer, Daniela M. \| Kiselar, Janna \| ... \| Narla, Goutham Cell, volume 181, issue 3, pages 688-701.e16 (2020). 10.1016/j.cell.2020.03.038 Cited by (102) \| Cite \| Source
Inactivation of PP2A by a recurrent mutation drives resistance to MEK inhibitors (journal article) O’Connor, Caitlin M. \| Leonard, Daniel \| Wiredja, Danica \| Avelar, Rita A. \| Wang, Zhizhi \| Schlatzer, Daniela \| Bryson, Benjamin \| Tokala, Eesha \| Taylor, Sarah E. \| Upadhyay, Aditya \| ... \| Narla, Goutham Oncogene, volume 39, issue 3, pages 703-717 (2020). 10.1038/s41388-019-1012-2 Cited by (23) \| Cite \| Source
CoPhosK (conference) Ayati, Marzieh \| Wiredja, Danica \| Schlatzer, Daniela \| Maxwell, Sean \| Li, Ming \| Koyutürk, Mehmet \| Chance, Mark R. BCB '19: 10th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics (2019) Niagara Falls NY USA 10.1145/3307339.3342621 Cited by (1) \| Cite \| Source
CoPhosK: A method for comprehensive kinase substrate annotation using co-phosphorylation analysis (journal article) Ayati, Marzieh \| Wiredja, Danica \| Schlatzer, Daniela \| Maxwell, Sean \| Li, Ming \| Koyutürk, Mehmet \| Chance, Mark R. PLOS Computational Biology, volume 15, issue 2, pages e1006678- (2019). 10.1371/journal.pcbi.1006678 Cited by (20) \| Cite \| Source
Global phosphoproteomics of CCR5-tropic HIV-1 signaling reveals reprogramming of cellular protein production pathways and identifies p70-S6K1 and MK2 as HIV-responsive kinases required for optimal infection of CD4+ T cells (journal article) Wiredja, Danica D. \| Tabler, Caroline O. \| Schlatzer, Daniela M. \| Li, Ming \| Chance, Mark R. \| Tilton, John C. Retrovirology, volume 15, issue 1 (2018). 10.1186/s12977-018-0423-4 Cited by (10) \| Cite \| Source \| Open Access
CoPhosK: A Method for Comprehensive Kinase Substrate Annotation Using Co-phosphorylation Analysis (journal article) Ayati, Marzieh \| Wiredja, Danica \| Schlatzer, Daniela \| Maxwell, Sean \| Li, Ming \| Koyutürk, Mehmet \| Chance, Mark R. bioRxiv (2018). 10.1101/251009 Cited by (1) \| Cite \| Source \| Open Access
The KSEA App: a web-based tool for kinase activity inference from quantitative phosphoproteomics (journal article) Wiredja, Danica D \| Koyutürk, Mehmet \| Chance, Mark R Bioinformatics, volume 33, issue 21, pages 3489-3491 (2017). 10.1093/bioinformatics/btx415 Cited by (147) \| Cite \| Source
Phosphoproteomics Profiling of Nonsmall Cell Lung Cancer Cells Treated with a Novel Phosphatase Activator (journal article) Wiredja, Danica D. \| Ayati, Marzieh \| Mazhar, Sahar \| Sangodkar, Jaya \| Maxwell, Sean \| Schlatzer, Daniela \| Narla, Goutham \| Koyutürk, Mehmet \| Chance, Mark R. PROTEOMICS, volume 17, issue 22 (2017). 10.1002/pmic.201700214 Cited by (20) \| Cite \| Source
Identifying Gene Interaction Networks (book chapter) In Statistical Human Genetics Wiredja, Danica \| Bebek, Gurkan Springer New York (2017) 10.1007/978-1-4939-7274-6_27 Cited by (9) \| Cite \| Source \| Open Access
MoBaS on Phosphorylation Data (conference) Ayati, Marzieh \| Wiredja, Danica \| Schlatzer, Daniela \| Narla, Goutham \| Chance, Mark R. \| Koyuturk, Mehmet BCB '16: ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics (2016) Seattle WA USA 10.1145/2975167.2995267 Cite \| Source \| Open Access