Hyun Gyu Lim

ScholarGPS® ID: 73186450214125

Affiliation

University of California, San Diego, San Diego, United States

Affiliation History

Field

Engineering and Computer Science

Discipline

Biomedical Engineering

Top Specialties

Pseudomonas Putida | Transcription Factor

Metrics Summary

Publication Count

Predicted Citations

135

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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Biocomposite thermoplastic polyurethanes containing evolved bacterial spores as living fillers to facilitate polymer disintegration (journal article) Kim, Han Sol \| Noh, Myung Hyun \| White, Evan M. \| Kandefer, Michael V. \| Wright, Austin F. \| Datta, Debika \| Lim, Hyun Gyu \| Smiggs, Ethan \| Locklin, Jason J. \| Rahman, Md Arifur \| ... \| Pokorski, Jonathan K. Nature Communications, volume 15, issue 1 (2024). 10.1038/s41467-024-47132-8 Cited by (2) \| Cite \| Source
Machine learning analysis of RB-TnSeq fitness data predicts functional gene modules in Pseudomonas putida KT2440 (journal article) Borchert, Andrew J. \| Bleem, Alissa C. \| Lim, Hyun Gyu \| Rychel, Kevin \| Dooley, Keven D. \| Kellermyer, Zoe A. \| Hodges, Tracy L. \| Palsson, Bernhard O. \| Beckham, Gregg T. mSystems, volume 9, issue 3 (2024). 10.1128/msystems.00942-23 Cite \| Source
Elucidation of independently modulated genes in Streptococcus pyogenes reveals carbon sources that control its expression of hemolytic toxins (journal article) Hirose, Yujiro \| Poudel, Saugat \| Sastry, Anand V. \| Rychel, Kevin \| Lamoureux, Cameron R. \| Szubin, Richard \| Zielinski, Daniel C. \| Lim, Hyun Gyu \| Menon, Nitasha D. \| Bergsten, Helena \| ... \| Nizet, Victor mSystems, volume 8, issue 3 (2023). 10.1128/msystems.00247-23 Cited by (6) \| Cite \| Source
Revealing oxidative pentose metabolism in new Pseudomonas putida isolates (journal article) Park, Mee‐Rye \| Gauttam, Rahul \| Fong, Bonnie \| Chen, Yan \| Lim, Hyun Gyu \| Feist, Adam M. \| Mukhopadhyay, Aindrila \| Petzold, Christopher J. \| Simmons, Blake A. \| Singer, Steven W. Environmental Microbiology, volume 25, issue 2, pages 493-504 (2023). 10.1111/1462-2920.16296 Cited by (2) \| Cite \| Source
Machine-learning from Pseudomonas putida KT2440 transcriptomes reveals its transcriptional regulatory network (journal article) Lim, Hyun Gyu \| Rychel, Kevin \| Sastry, Anand V. \| Bentley, Gayle J. \| Mueller, Joshua \| Schindel, Heidi S. \| Larsen, Peter E. \| Laible, Philip D. \| Guss, Adam M. \| Niu, Wei \| ... \| Palsson, Bernhard O. Metabolic Engineering, volume 72 (2022). 10.1016/j.ymben.2022.04.004 Cited by (25) \| Cite \| Source
A systems approach discovers the role and characteristics of seven LysR type transcription factors in Escherichia coli (journal article) Rodionova, Irina A. \| Gao, Ye \| Monk, Jonathan \| Hefner, Ying \| Wong, Nicholas \| Szubin, Richard \| Lim, Hyun Gyu \| Rodionov, Dmitry A. \| Zhang, Zhongge \| Saier, Milton H. \| Palsson, Bernhard O. Scientific Reports, volume 12, issue 1 (2022). 10.1038/s41598-022-11134-7 Cited by (7) \| Cite \| Source
Elucidation of Independently Modulated Genes in Streptococcus Pyogenes Reveals Carbon Sources that Control its Expression of Hemolytic Toxins (journal article) Hirose, Y. \| Poudel, Saugat \| Sastry, Anand V. \| Rychel, Kevin \| Szubin, Richard \| Zielinski, Daniel C. \| Lim, Hyun Gyu \| Menon, Nitasha D. \| Bergsten, Helena \| Uchiyama, Satoshi \| ... \| Nizet, Victor SSRN Electronic Journal (2022). 10.2139/ssrn.4260497 Cite \| Source
Unraveling the functions of uncharacterized transcription factors in Escherichia coli using ChIP-exo (journal article) Gao, Ye \| Lim, Hyun Gyu \| Verkler, Hans \| Szubin, Richard \| Quach, Daniel \| Rodionova, Irina \| Chen, Ke \| Yurkovich, James T \| Cho, Byung-Kwan \| Palsson, Bernhard O Nucleic Acids Research, volume 49, issue 17, pages 9696-9710 (2021). 10.1093/nar/gkab735 Cited by (24) \| Cite \| Source
Generation of Pseudomonas putida KT2440 Strains with Efficient Utilization of Xylose and Galactose via Adaptive Laboratory Evolution (journal article) Lim, Hyun Gyu \| Eng, Thomas \| Banerjee, Deepanwita \| Alarcon, Geovanni \| Lau, Andrew K. \| Park, Mee-Rye \| Simmons, Blake A. \| Palsson, Bernhard O. \| Singer, Steven W. \| Mukhopadhyay, Aindrila \| Feist, Adam M. ACS Sustainable Chemistry & Engineering, volume 9, issue 34, pages 11512-11523 (2021). 10.1021/acssuschemeng.1c03765 Cited by (27) \| Cite \| Source
Identification of a transcription factor, PunR, that regulates the purine and purine nucleoside transporter punC in E. coli (journal article) Rodionova, Irina A. \| Gao, Ye \| Sastry, Anand \| Hefner, Ying \| Lim, Hyun Gyu \| Rodionov, Dmitry A. \| Saier, Milton H. \| Palsson, Bernhard O. Communications Biology, volume 4, issue 1 (2021). 10.1038/s42003-021-02516-0 Cited by (11) \| Cite \| Source
Generation of ionic liquid tolerant Pseudomonas putida KT2440 strains via adaptive laboratory evolution (journal article) Lim, Hyun Gyu \| Fong, Bonnie \| Alarcon, Geovanni \| Magurudeniya, Harsha D. \| Eng, Thomas \| Szubin, Richard \| Olson, Connor A. \| Palsson, Bernhard O. \| Gladden, John M. \| Simmons, Blake A. \| ... \| Feist, Adam M. Green Chemistry, volume 22, issue 17, pages 5677-5690 (2020). 10.1039/D0GC01663B Cited by (24) \| Cite \| Source
A Improvement Study on Safety Assurance of Main Landing Gear Failure for Rotary Wing Aircraft (journal article) Choi, Jae Hyung \| Chang, Min Wook \| Lim, Hyun-Gyu \| Lee, Je Suk Journal of the Korean Society for Aeronautical & Space Sciences, volume 45, issue 6, pages 490-497 (2017). 10.5139/JKSAS.2017.45.6.490 Cite \| Source