Kenneth Barr

ScholarGPS® ID: 71616245284676

Affiliation

University of Chicago, Chicago, United States

Affiliation History

Field

Life Sciences

Discipline

Genetics

Top Specialties

Gene Expression | Gene Expression Profiling

Metrics Summary

Publication Count

Predicted Citations

787

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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The relationship between regulatory changes in cis and trans and the evolution of gene expression in humans and chimpanzees (journal article) Barr, Kenneth A. \| Rhodes, Katherine L. \| Gilad, Yoav Genome Biology, volume 24, issue 1 (2023). 10.1186/s13059-023-03019-3 Cited by (1) \| Cite \| Source
Human embryoid bodies as a novel system for genomic studies of functionally diverse cell types (journal article) Rhodes, Katherine \| Barr, Kenneth A \| Popp, Joshua M \| Strober, Benjamin J \| Battle, Alexis \| Gilad, Yoav eLife, volume 11 (2022). 10.7554/eLife.71361 Cited by (4) \| Cite \| Source
Single-cell sequencing reveals lineage-specific dynamic genetic regulation of gene expression during human cardiomyocyte differentiation (journal article) Elorbany, Reem \| Popp, Joshua M. \| Rhodes, Katherine \| Strober, Benjamin J. \| Barr, Kenneth \| Qi, Guanghao \| Gilad, Yoav \| Battle, Alexis PLOS Genetics, volume 18, issue 1, pages e1009666- (2022). 10.1371/journal.pgen.1009666 Cited by (20) \| Cite \| Source
Divergence in alternative polyadenylation contributes to gene regulatory differences between humans and chimpanzees (journal article) Mittleman, Briana E \| Pott, Sebastian \| Warland, Shane \| Barr, Kenneth \| Cuevas, Claudia \| Gilad, Yoav eLife, volume 10 (2021). 10.7554/eLife.62548 Cited by (7) \| Cite \| Source
Fully interpretable deep learning model of transcriptional control (journal article) Liu, Yi \| Barr, Kenneth \| Reinitz, John Bioinformatics, volume 36, issue Supplement_1, pages i499-i507 (2020). 10.1093/bioinformatics/btaa506 Cited by (14) \| Cite \| Source
Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis (journal article) Hsiao, Chiaowen Joyce \| Tung, PoYuan \| Blischak, John D. \| Burnett, Jonathan E. \| Barr, Kenneth A. \| Dey, Kushal K. \| Stephens, Matthew \| Gilad, Yoav Genome Research, volume 30, issue 4, pages 611-621 (2020). 10.1101/gr.247759.118 Cited by (45) \| Cite \| Source
An in silico analysis of robust but fragile gene regulation links enhancer length to robustness (journal article) Barr, Kenneth \| Reinitz, John \| Radulescu, Ovidiu PLOS Computational Biology, volume 15, issue 11, pages e1007497- (2019). 10.1371/journal.pcbi.1007497 Cited by (6) \| Cite \| Source
Aristaless Controls Butterfly Wing Color Variation Used in Mimicry and Mate Choice (journal article) Westerman, Erica L. \| VanKuren, Nicholas W. \| Massardo, Darli \| Tenger-Trolander, Ayşe \| Zhang, Wei \| Hill, Ryan I. \| Perry, Michael \| Bayala, Erick \| Barr, Kenneth \| Chamberlain, Nicola \| ... \| Kronforst, Marcus R. Current Biology, volume 28, issue 21, pages 3469-3474.e4 (2018). 10.1016/j.cub.2018.08.051 Cited by (61) \| Cite \| Source
Synthetic enhancer design by in silico compensatory evolution reveals flexibility and constraint in cis-regulation (journal article) Barr, Kenneth A. \| Martinez, Carlos \| Moran, Jennifer R. \| Kim, Ah-Ram \| Ramos, Alexandre F. \| Reinitz, John BMC Systems Biology, volume 11, issue 1 (2017). 10.1186/s12918-017-0485-2 Cited by (12) \| Cite \| Source \| Open Access
A sequence level model of an intact locus predicts the location and function of nonadditive enhancers (journal article) Barr, Kenneth A. \| Reinitz, John PLOS ONE, volume 12, issue 7, pages e0180861- (2017). 10.1371/journal.pone.0180861 Cited by (12) \| Cite \| Source \| Open Access
Addendum to: “Egr2-dependent gene expression profiling and ChIP-Seq reveal novel biologic targets in T cell anergy” [Mol. Immunol. 55 (2013) 283–291] (journal article) Zheng, Yan \| Zha, Yuanyuan \| Spaapen, Robbert M. \| Mathew, Rebecca \| Barr, Kenneth \| Bendelac, Albert \| Gajewski, Thomas F. Molecular Immunology, volume 56, issue 4, pages 530- (2013). 10.1016/j.molimm.2013.05.229 Cited by (1) \| Cite \| Source
Egr2-dependent gene expression profiling and ChIP-Seq reveal novel biologic targets in T cell anergy (journal article) Zheng, Yan \| Zha, Yuanyuan \| Spaapen, Robbert M. \| Mathew, Rebecca \| Barr, Kenneth \| Bendelac, Albert \| Gajewski, Thomas F. Molecular Immunology, volume 55, issue 3-4, pages 283-291 (2013). 10.1016/j.molimm.2013.03.006 Cited by (34) \| Cite \| Source \| Open Access
A synthetic biology approach to the development of transcriptional regulatory models and custom enhancer design (journal article) Martinez, Carlos A. \| Barr, Kenneth A. \| Kim, Ah-Ram \| Reinitz, John Methods, volume 62, issue 1, pages 91-98 (2013). 10.1016/j.ymeth.2013.05.014 Cited by (12) \| Cite \| Source \| Open Access
Erratum: Corrigendum: Elevated and sustained expression of the transcription factors Egr1 and Egr2 controls NKT lineage differentiation in response to TCR signaling (journal article) Seiler, Michael P \| Mathew, Rebecca \| Liszewski, Megan K \| Spooner, Chauncey \| Barr, Kenneth \| Meng, Fanyong \| Singh, Harinder \| Bendelac, Albert Nature Immunology, volume 14, issue 4, pages 413-413 (2013). 10.1038/ni0413-413d Cited by (1) \| Cite \| Source \| Open Access
Elevated and sustained expression of the transcription factors Egr1 and Egr2 controls NKT lineage differentiation in response to TCR signaling (journal article) Seiler, Michael P \| Mathew, Rebecca \| Liszewski, Megan K \| Spooner, Chauncey J \| Barr, Kenneth \| Meng, Fanyong \| Singh, Harinder \| Bendelac, Albert Nature Immunology, volume 13, issue 3, pages 264-271 (2012). 10.1038/ni.2230 Cited by (172) \| Cite \| Source \| Open Access
PLZF induces an intravascular surveillance program mediated by long-lived LFA-1–ICAM-1 interactions (journal article) Thomas, Seddon Y. \| Scanlon, Seth T. \| Griewank, Klaus G. \| Constantinides, Michael G. \| Savage, Adam K. \| Barr, Kenneth A. \| Meng, Fanyong \| Luster, Andrew D. \| Bendelac, Albert Journal of Experimental Medicine, volume 208, issue 6, pages 1179-1188 (2011). 10.1084/jem.20102630 Cited by (161) \| Cite \| Source \| Open Access
TCR signaling drives early growth response 2 gene expression and enforces natural killer T cell lineage commitment (153.40) (journal article) Seiler, Michael \| Mathew, Rebecca \| Spooner, Chauncey \| Barr, Kenneth \| Singh, Harinder \| Bendelac, Albert The Journal of Immunology, volume 186, issue 1_Supplement, pages 153.40-153.40 (2011). 10.4049/jimmunol.186.Supp.153.40 Cite \| Source