Bingqing Xie

ScholarGPS® ID: 70553919062949

Affiliation

University of Chicago, Chicago, United States

Affiliation History

Field

Life Sciences

Discipline

Genetics

Top Specialties

Bioinformatics | Cancer | Nucleic Acid

Metrics Summary

Publication Count

Predicted Citations

721

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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Microbiome function and neurodevelopment in Black infants: vitamin B12 emerges as a key factor (journal article) Oliphant, Kaitlyn \| Cruz Ayala, Wilfredo \| Ilyumzhinova, Rimma \| Mbayiwa, Kimberley \| Sroka, Anna \| Xie, Bingqing \| Andrews, Bree \| Keenan, Kate \| Claud, Erika C. Gut Microbes, volume 16, issue 1 (2024). 10.1080/19490976.2023.2298697 Cite \| Source
Exploring the tumor micro-environment in primary and metastatic tumors of different ovarian cancer histotypes (journal article) Xie, Bingqing \| Olalekan, Susan \| Back, Rebecca \| Ashitey, Naa Asheley \| Eckart, Heather \| Basu, Anindita Frontiers in Cell and Developmental Biology, volume 11 (2024). 10.3389/fcell.2023.1297219 Cite \| Source
Using Advanced Bioinformatics Tools to Identify Novel Therapeutic Candidates for Proliferative Vitreoretinopathy (journal article) Xie, Edward F. \| Xie, Bingqing \| Nadeem, Urooba \| D'Souza, Mark \| Reem, Gonnah \| Sulakhe, Dinanath \| Skondra, Dimitra Translational Vision Science & Technology, volume 12, issue 5, pages 19- (2023). 10.1167/tvst.12.5.19 Cited by (1) \| Cite \| Source
Engineered exosomes targeting MYC reverse the proneural-mesenchymal transition and extend survival of glioblastoma (journal article) Haltom, Amanda R. \| Hassen, Wafa E. \| Hensel, Janine \| Kim, Jiha \| Sugimoto, Hikaru \| Li, Bingrui \| McAndrews, Kathleen M. \| Conner, Meagan R. \| Kirtley, Michelle L. \| Luo, Xin \| ... \| Kalluri, Raghu Extracellular Vesicle, volume 1 (2022). 10.1016/j.vesic.2022.100014 Cited by (12) \| Cite \| Source
Absence of Gut Microbiota Is Associated with RPE/Choroid Transcriptomic Changes Related to Age-Related Macular Degeneration Pathobiology and Decreased Choroidal Neovascularization (journal article) Zhang, Jason Y. \| Xie, Bingqing \| Barba, Hugo \| Nadeem, Urooba \| Movahedan, Asadolah \| Deng, Nini \| Spedale, Melanie \| D’Souza, Mark \| Luo, Wendy \| Leone, Vanessa \| ... \| Skondra, Dimitra International Journal of Molecular Sciences, volume 23, issue 17, pages 9676- (2022). 10.3390/ijms23179676 Cited by (12) \| Cite \| Source
Using Advanced Bioinformatics Tools to Identify Novel Therapeutic Candidates for Age-Related Macular Degeneration (journal article) Nadeem, Urooba \| Xie, Bingqing \| Xie, Edward F. \| D'Souza, Mark \| Dao, David \| Sulakhe, Dinanath \| Skondra, Dimitra Translational Vision Science & Technology, volume 11, issue 8, pages 10- (2022). 10.1167/tvst.11.8.10 Cited by (10) \| Cite \| Source
High-Fat Diet Alters the Retinal Pigment Epithelium and Choroidal Transcriptome in the Absence of Gut Microbiota (journal article) Xiao, Jason \| Xie, Bingqing \| Dao, David \| Spedale, Melanie \| D’Souza, Mark \| Theriault, Betty \| Hariprasad, Seenu M. \| Sulakhe, Dinanath \| Chang, Eugene B. \| Skondra, Dimitra Cells, volume 11, issue 13, pages 2076- (2022). 10.3390/cells11132076 Cited by (4) \| Cite \| Source
Dietary Cholesterol‐Induced Gut Microbes Drive Nonalcoholic Fatty Liver Disease Pathogenesis in a Murine Model (journal article) Hermanson, Jake B. \| Fei, Na \| Miyoshi, Sawako \| Miyoshi, Jun \| Hawkins, Maximilian \| Xie, Bingqing \| Sulakhe, Dinanath \| Hart, John \| Chang, Eugene B. \| Leone, Vanessa A. \| Charlton, Michael The FASEB Journal, volume 36, issue S1 (2022). 10.1096/fasebj.2022.36.S1.0R748 Cited by (1) \| Cite \| Source
Creating patient-specific vein models to characterize wall shear stress in hemodialysis population (journal article) Moya-Rodríguez, Andrés \| Xie, Bingqing \| Cook, Dylan \| Klineberg, Maren \| Nathan, Sandeep \| Hammes, Mary \| Basu, Anindita Computational and Structural Biotechnology Journal, volume 20 (2022). 10.1016/j.csbj.2022.10.010 Cite \| Source
mDrop-Seq: Massively Parallel Single-Cell RNA-Seq of Saccharomyces cerevisiae and Candida albicans (journal article) Dohn, Ryan \| Xie, Bingqing \| Back, Rebecca \| Selewa, Alan \| Eckart, Heather \| Rao, Reeta Prusty \| Basu, Anindita Vaccines, volume 10, issue 1, pages 30- (2021). 10.3390/vaccines10010030 Cited by (10) \| Cite \| Source
Unique somatic variants in DNA from urine exosomes of individuals with bladder cancer (journal article) Zhou, Xunian \| Kurywchak, Paul \| Wolf-Dennen, Kerri \| Che, Sara P.Y. \| Sulakhe, Dinanath \| D’Souza, Mark \| Xie, Bingqing \| Maltsev, Natalia \| Gilliam, T. Conrad \| Wu, Chia-Chin \| ... \| Kalluri, Raghu Molecular Therapy - Methods & Clinical Development, volume 22 (2021). 10.1016/j.omtm.2021.05.010 Cited by (13) \| Cite \| Source
High-Fat Diet Alters the Retinal Transcriptome in the Absence of Gut Microbiota (journal article) Dao, David \| Xie, Bingqing \| Nadeem, Urooba \| Xiao, Jason \| Movahedan, Asad \| D’Souza, Mark \| Leone, Vanessa \| Hariprasad, Seenu M. \| Chang, Eugene B. \| Sulakhe, Dinanath \| Skondra, Dimitra Cells, volume 10, issue 8, pages 2119- (2021). 10.3390/cells10082119 Cited by (11) \| Cite \| Source
Characterizing the tumor microenvironment of metastatic ovarian cancer by single-cell transcriptomics (journal article) Olalekan, Susan \| Xie, Bingqing \| Back, Rebecca \| Eckart, Heather \| Basu, Anindita Cell Reports, volume 35, issue 8, pages 109165- (2021). 10.1016/j.celrep.2021.109165 Cited by (79) \| Cite \| Source
Bacteroidota and Lachnospiraceae integration into the gut microbiome at key time points in early life are linked to infant neurodevelopment (journal article) Oliphant, Kaitlyn \| Ali, Mehneez \| D’Souza, Mark \| Hughes, Patrick D. \| Sulakhe, Dinanath \| Wang, Annie Z. \| Xie, Bingqing \| Yeasin, Rummanu \| Msall, Michael E. \| Andrews, Bree \| Claud, Erika C. Gut Microbes, volume 13, issue 1 (2021). 10.1080/19490976.2021.1997560 Cited by (44) \| Cite \| Source
Elucidating the immune response in metastatic ovarian cancer using single cell transcriptomics (journal article) Olalekan, Susan \| Xie, Bingqing \| Back, Rebecca \| Eckart, Heather \| Basu, Anindita The Journal of Immunology, volume 204, issue 1_Supplement, pages 243.16-243.16 (2020). 10.4049/jimmunol.204.Supp.243.16 Cite \| Source
Systematic Comparison of High-throughput Single-Cell and Single-Nucleus Transcriptomes during Cardiomyocyte Differentiation (journal article) Selewa, Alan \| Dohn, Ryan \| Eckart, Heather \| Lozano, Stephanie \| Xie, Bingqing \| Gauchat, Eric \| Elorbany, Reem \| Rhodes, Katherine \| Burnett, Jonathan \| Gilad, Yoav \| ... \| Basu, Anindita Scientific Reports, volume 10, issue 1 (2020). 10.1038/s41598-020-58327-6 Cited by (60) \| Cite \| Source
Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources (journal article) Sulakhe, Dinanath \| D’Souza, Mark \| Wang, Sheng \| Balasubramanian, Sandhya \| Athri, Prashanth \| Xie, Bingqing \| Canzar, Stefan \| Agam, Gady \| Gilliam, T Conrad \| Maltsev, Natalia Briefings in Bioinformatics, volume 20, issue 5, pages 1754-1768 (2019). 10.1093/bib/bby047 Cited by (20) \| Cite \| Source \| Open Access
XPO1 Inhibitor Selinexor Overcomes Intrinsic Ibrutinib Resistance in Mantle Cell Lymphoma via Nuclear Retention of IκB (journal article) Ming, Mei \| Wu, Wenjun \| Xie, Bingqing \| Sukhanova, Madina \| Wang, Weige \| Kadri, Sabah \| Sharma, Shruti \| Lee, Jimmy \| Shacham, Sharon \| Landesman, Yosef \| ... \| Wang, Y. Lynn Molecular Cancer Therapeutics, volume 17, issue 12, pages 2564-2574 (2018). 10.1158/1535-7163.MCT-17-0789-ATR Cited by (35) \| Cite \| Source
Chemokine expression in the early response to injury in human airway epithelial cells (journal article) Xie, Bingqing \| Laxman, Bharathi \| Hashemifar, Somaye \| Stern, Randi \| Gilliam, T. Conrad \| Maltsev, Natalia \| White, Steven R. PLOS ONE, volume 13, issue 3, pages e0193334- (2018). 10.1371/journal.pone.0193334 Cited by (7) \| Cite \| Source \| Open Access
DEEPre: sequence-based enzyme EC number prediction by deep learning (journal article) Li, Yu \| Wang, Sheng \| Umarov, Ramzan \| Xie, Bingqing \| Fan, Ming \| Li, Lihua \| Gao, Xin Bioinformatics, volume 34, issue 5, pages 760-769 (2018). 10.1093/bioinformatics/btx680 Cited by (171) \| Cite \| Source \| Open Access