Alexis Battle

ScholarGPS® ID: 68811429478228

Affiliation

Johns Hopkins University, Baltimore, United States

Affiliation History

Field

Engineering and Computer Science

Discipline

Biomedical Engineering

Top Specialties

Metrics Summary

Publication Count

Predicted Citations

6,307

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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Artificial intelligence and technology collaboratories: Empowering innovation in AI + AgeTech (journal article) Li, Rose M. \| Abadir, Peter M. \| Battle, Alexis \| Chellappa, Rama \| Choudhry, Niteesh K. \| Demiris, George \| Ganesan, Deepak \| Karlawish, Jason \| Moore, Jason H. \| Walston, Jeremy D. Journal of the American Geriatrics Society, volume 72, issue 5, pages 1602-1604 (2024). 10.1111/jgs.18804 Cited by (1) \| Cite \| Source
SURGE: uncovering context-specific genetic-regulation of gene expression from single-cell RNA sequencing using latent-factor models (journal article) Strober, Benjamin J. \| Tayeb, Karl \| Popp, Joshua \| Qi, Guanghao \| Gordon, M. Grace \| Perez, Richard \| Ye, Chun Jimmie \| Battle, Alexis Genome Biology, volume 25, issue 1 (2024). 10.1186/s13059-023-03152-z Cited by (1) \| Cite \| Source
Single-cell allele-specific expression analysis reveals dynamic and cell-type-specific regulatory effects (journal article) Qi, Guanghao \| Strober, Benjamin J. \| Popp, Joshua M. \| Keener, Rebecca \| Ji, Hongkai \| Battle, Alexis Nature Communications, volume 14, issue 1 (2023). 10.1038/s41467-023-42016-9 Cited by (3) \| Cite \| Source
Jasmine and Iris: population-scale structural variant comparison and analysis (journal article) Kirsche, Melanie \| Prabhu, Gautam \| Sherman, Rachel \| Ni, Bohan \| Battle, Alexis \| Aganezov, Sergey \| Schatz, Michael C. Nature Methods, volume 20, issue 3, pages 408-417 (2023). 10.1038/s41592-022-01753-3 Cited by (28) \| Cite \| Source
Molecular quantitative trait loci (journal article) Aguet, François \| Alasoo, Kaur \| Li, Yang I. \| Battle, Alexis \| Im, Hae Kyung \| Montgomery, Stephen B. \| Lappalainen, Tuuli Nature Reviews Methods Primers, volume 3, issue 1 (2023). 10.1038/s43586-022-00188-6 Cited by (17) \| Cite \| Source
Network reconstruction for trans acting genetic loci using multi-omics data and prior information (journal article) Hawe, Johann S. \| Saha, Ashis \| Waldenberger, Melanie \| Kunze, Sonja \| Wahl, Simone \| Müller-Nurasyid, Martina \| Prokisch, Holger \| Grallert, Harald \| Herder, Christian \| Peters, Annette \| ... \| Heinig, Matthias Genome Medicine, volume 14, issue 1 (2022). 10.1186/s13073-022-01124-9 Cited by (1) \| Cite \| Source
INTEGRATIVE MACHINE LEARNING FOR CHARACTERIZATION OF NON-CODING DISEASE VARIANTS (journal article) Battle, Alexis European Neuropsychopharmacology, volume 63 (2022). 10.1016/j.euroneuro.2022.07.032 Cite \| Source
Aggregative trans-eQTL analysis detects trait-specific target gene sets in whole blood (journal article) Dutta, Diptavo \| He, Yuan \| Saha, Ashis \| Arvanitis, Marios \| Battle, Alexis \| Chatterjee, Nilanjan Nature Communications, volume 13, issue 1 (2022). 10.1038/s41467-022-31845-9 Cited by (7) \| Cite \| Source
Redefining tissue specificity of genetic regulation of gene expression in the presence of allelic heterogeneity (journal article) Arvanitis, Marios \| Tayeb, Karl \| Strober, Benjamin J. \| Battle, Alexis The American Journal of Human Genetics, volume 109, issue 2, pages 223-239 (2022). 10.1016/j.ajhg.2022.01.002 Cited by (22) \| Cite \| Source
Single-cell sequencing reveals lineage-specific dynamic genetic regulation of gene expression during human cardiomyocyte differentiation (journal article) Elorbany, Reem \| Popp, Joshua M. \| Rhodes, Katherine \| Strober, Benjamin J. \| Barr, Kenneth \| Qi, Guanghao \| Gilad, Yoav \| Battle, Alexis PLOS Genetics, volume 18, issue 1, pages e1009666- (2022). 10.1371/journal.pgen.1009666 Cited by (20) \| Cite \| Source
Bayesian Multi-View Clustering given complex inter-view structure (journal article) Shapiro, Benjamin D. \| Battle, Alexis F1000Research, volume 11 (2022). 10.12688/f1000research.126215.2 Cite \| Source
Bayesian Multi-View Clustering given complex inter-view structure (journal article) Shapiro, Benjamin D. \| Battle, Alexis F1000Research, volume 11 (2022). 10.12688/f1000research.126215.1 Cite \| Source
Coexpression network architecture reveals the brain-wide and multiregional basis of disease susceptibility (journal article) Hartl, Christopher L. \| Ramaswami, Gokul \| Pembroke, William G. \| Muller, Sandrine \| Pintacuda, Greta \| Saha, Ashis \| Parsana, Princy \| Battle, Alexis \| Lage, Kasper \| Geschwind, Daniel H. Nature Neuroscience, volume 24, issue 9, pages 1313-1323 (2021). 10.1038/s41593-021-00887-5 Cited by (33) \| Cite \| Source
Linear and Nonlinear Mendelian Randomization Analyses of the Association Between Diastolic Blood Pressure and Cardiovascular Events (journal article) Arvanitis, Marios \| Qi, Guanghao \| Bhatt, Deepak L. \| Post, Wendy S. \| Chatterjee, Nilanjan \| Battle, Alexis \| McEvoy, John W. Circulation, volume 143, issue 9, pages 895-906 (2021). 10.1161/CIRCULATIONAHA.120.049819 Cited by (69) \| Cite \| Source
Transcriptional profile of platelets and iPSC-derived megakaryocytes from whole-genome and RNA sequencing (journal article) Kammers, Kai \| Taub, Margaret A. \| Rodriguez, Benjamin \| Yanek, Lisa R. \| Ruczinski, Ingo \| Martin, Joshua \| Kanchan, Kanika \| Battle, Alexis \| Cheng, Linzhao \| Wang, Zack Z. \| ... \| Mathias, Rasika A. Blood, volume 137, issue 7, pages 959-968 (2021). 10.1182/blood.2020006115 Cited by (19) \| Cite \| Source
Where Are the Disease-Associated eQTLs? (journal article) Umans, Benjamin D. \| Battle, Alexis \| Gilad, Yoav Trends in Genetics, volume 37, issue 2, pages 109-124 (2021). 10.1016/j.tig.2020.08.009 Cited by (110) \| Cite \| Source
Genetics (book chapter) In Precision Medicine in Cardiovascular Disease Prevention Arvanitis, Marios \| Post, Wendy S. \| Battle, Alexis Springer International Publishing (2021) 10.1007/978-3-030-75055-8_3 Cite \| Source
sn-spMF: matrix factorization informs tissue-specific genetic regulation of gene expression (journal article) He, Yuan \| Chhetri, Surya B. \| Arvanitis, Marios \| Srinivasan, Kaushik \| Aguet, François \| Ardlie, Kristin G. \| Barbeira, Alvaro N. \| Bonazzola, Rodrigo \| Im, Hae Kyung \| Brown, Christopher D. \| Battle, Alexis Genome Biology, volume 21, issue 1 (2020). 10.1186/s13059-020-02129-6 Cited by (10) \| Cite \| Source
GBAT: a gene-based association test for robust detection of trans-gene regulation (journal article) Liu, Xuanyao \| Mefford, Joel A. \| Dahl, Andrew \| He, Yuan \| Subramaniam, Meena \| Battle, Alexis \| Price, Alkes L. \| Zaitlen, Noah Genome Biology, volume 21, issue 1 (2020). 10.1186/s13059-020-02120-1 Cited by (7) \| Cite \| Source
Genome-wide association and multi-omic analyses reveal ACTN2 as a gene linked to heart failure (journal article) Arvanitis, Marios \| Tampakakis, Emmanouil \| Zhang, Yanxiao \| Wang, Wei \| Auton, Adam \| Agee, Michelle \| Aslibekyan, Stella \| Bell, Robert K. \| Bryc, Katarzyna \| Clark, Sarah K. \| ... \| Battle, Alexis Nature Communications, volume 11, issue 1 (2020). 10.1038/s41467-020-14843-7 Cited by (44) \| Cite \| Source

Title	Investigators	Year	Cost	Agency
3/3 Building integrative CNS networks for genomic analysis of autism	Battle, Alexis	2020	$246,222	NATIONAL INSTITUTE OF MENTAL HEALTH
3/3 Building integrative CNS networks for genomic analysis of autism	Battle, Alexis	2019	$244,539	NATIONAL INSTITUTE OF MENTAL HEALTH
Methods for analysis of regulatory variation in cellular differentiation	Battle, Alexis	2019	$520,253	NATIONAL INSTITUTE OF GENERAL MEDICAL SCIENCES
3/3 Building integrative CNS networks for genomic analysis of autism	Battle, Alexis	2018	$242,004	NATIONAL INSTITUTE OF MENTAL HEALTH
Methods for analysis of regulatory variation in cellular differentiation	Battle, Alexis	2018	$543,228	NATIONAL INSTITUTE OF GENERAL MEDICAL SCIENCES
3/3 Building integrative CNS networks for genomic analysis of autism	Battle, Alexis	2017	$239,543	NATIONAL INSTITUTE OF MENTAL HEALTH
Methods for analysis of regulatory variation in cellular differentiation	Battle, Alexis	2017	$463,781	NATIONAL INSTITUTE OF GENERAL MEDICAL SCIENCES
3/3 Building integrative CNS networks for genomic analysis of autism	Battle, Alexis	2016	$262,443	NATIONAL INSTITUTE OF MENTAL HEALTH
Methods for analysis of regulatory variation in cellular differentiation	Battle, Alexis	2016	$404,036	NATIONAL INSTITUTE OF GENERAL MEDICAL SCIENCES