Toni Giorgino

ScholarGPS® ID: 65915088402107

Affiliation

University of Milan, Milan, Italy

Affiliation History

Field

Life Sciences

Discipline

Biology and Biological Sciences

Top Specialties

Molecular Dynamics | Biophysics | Distributed Computing | Energy

Metrics Summary

Publication Count

Predicted Citations

2,680

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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Machine learning coarse-grained potentials of protein thermodynamics (journal article) Majewski, Maciej \| Pérez, Adrià \| Thölke, Philipp \| Doerr, Stefan \| Charron, Nicholas E. \| Giorgino, Toni \| Husic, Brooke E. \| Clementi, Cecilia \| Noé, Frank \| De Fabritiis, Gianni Nature Communications, volume 14, issue 1 (2023). 10.1038/s41467-023-41343-1 Cited by (23) \| Cite \| Source
Classification Model for the Second Extracellular Loop of Class A GPCRs (journal article) Nicoli, Alessandro \| Dunkel, Andreas \| Giorgino, Toni \| de Graaf, Chris \| Di Pizio, Antonella Journal of Chemical Information and Modeling, volume 62, issue 3, pages 511-522 (2022). 10.1021/acs.jcim.1c01056 Cited by (26) \| Cite \| Source
SCoV2-MD: a database for the dynamics of the SARS-CoV-2 proteome and variant impact predictions (journal article) Torrens-Fontanals, Mariona \| Peralta-García, Alejandro \| Talarico, Carmine \| Guixà-González, Ramon \| Giorgino, Toni \| Selent, Jana Nucleic Acids Research, volume 50, issue D1, pages D858-D866 (2022). 10.1093/nar/gkab977 Cited by (17) \| Cite \| Source
TorchMD: A Deep Learning Framework for Molecular Simulations (journal article) Doerr, Stefan \| Majewski, Maciej \| Pérez, Adrià \| Krämer, Andreas \| Clementi, Cecilia \| Noe, Frank \| Giorgino, Toni \| De Fabritiis, Gianni Journal of Chemical Theory and Computation, volume 17, issue 4, pages 2355-2363 (2021). 10.1021/acs.jctc.0c01343 Cited by (119) \| Cite \| Source
A novel hotspot of gelsolin instability triggers an alternative mechanism of amyloid aggregation (journal article) Bollati, Michela \| Diomede, Luisa \| Giorgino, Toni \| Natale, Carmina \| Fagnani, Elisa \| Boniardi, Irene \| Barbiroli, Alberto \| Alemani, Rebecca \| Beeg, Marten \| Gobbi, Marco \| ... \| de Rosa, Matteo Computational and Structural Biotechnology Journal, volume 19 (2021). 10.1016/j.csbj.2021.11.025 Cited by (2) \| Cite \| Source
Different mechanisms of GIP and GLP-1 action explain their different therapeutic efficacy in type 2 diabetes (journal article) Grespan, Eleonora \| Giorgino, Toni \| Natali, Andrea \| Ferrannini, Ele \| Mari, Andrea Metabolism, volume 114 (2021). 10.1016/j.metabol.2020.154415 Cited by (13) \| Cite \| Source
Computational and Experimental Characterization of NF023, A Candidate Anticancer Compound Inhibiting cIAP2/TRAF2 Assembly (journal article) Cossu, Federica \| Sorrentino, Luca \| Fagnani, Elisa \| Zaffaroni, Mattia \| Milani, Mario \| Giorgino, Toni \| Mastrangelo, Eloise Journal of Chemical Information and Modeling, volume 60, issue 10, pages 5036-5044 (2020). 10.1021/acs.jcim.0c00518 Cited by (3) \| Cite \| Source
The structure of N184K amyloidogenic variant of gelsolin highlights the role of the H-bond network for protein stability and aggregation properties (journal article) de Rosa, Matteo \| Barbiroli, Alberto \| Bonì, Francesco \| Scalone, Emanuele \| Mattioni, Davide \| Vanoni, Maria A. \| Patrone, Marco \| Bollati, Michela \| Mastrangelo, Eloise \| Giorgino, Toni \| Milani, Mario European Biophysics Journal, volume 49, issue 1, pages 11-19 (2020). 10.1007/s00249-019-01409-9 Cited by (4) \| Cite \| Source
PYCV: a PLUMED 2 Module Enabling the Rapid Prototyping of Collective Variables in Python (journal article) Giorgino, Toni Journal of Open Source Software, volume 4, issue 42, pages 1773- (2019). 10.21105/joss.01773 Cited by (3) \| Cite \| Source
High-resolution crystal structure of gelsolin domain 2 in complex with the physiological calcium ion (journal article) Bollati, Michela \| Scalone, Emanuele \| Bonì, Francesco \| Mastrangelo, Eloise \| Giorgino, Toni \| Milani, Mario \| de Rosa, Matteo Biochemical and Biophysical Research Communications, volume 518, issue 1, pages 94-99 (2019). 10.1016/j.bbrc.2019.08.013 Cited by (4) \| Cite \| Source
Exploring the role of interdisciplinarity in physics: Success, talent and luck (journal article) Pluchino, Alessandro \| Burgio, Giulio \| Rapisarda, Andrea \| Biondo, Alessio Emanuele \| Pulvirenti, Alfredo \| Ferro, Alfredo \| Giorgino, Toni PLOS ONE, volume 14, issue 6, pages e0218793- (2019). 10.1371/journal.pone.0218793 Cited by (17) \| Cite \| Source
Nanobody interaction unveils structure, dynamics and proteotoxicity of the Finnish-type amyloidogenic gelsolin variant (journal article) Giorgino, Toni \| Mattioni, Davide \| Hassan, Amal \| Milani, Mario \| Mastrangelo, Eloise \| Barbiroli, Alberto \| Verhelle, Adriaan \| Gettemans, Jan \| Barzago, Maria Monica \| Diomede, Luisa \| de Rosa, Matteo Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease, volume 1865, issue 3, pages 648-660 (2019). 10.1016/j.bbadis.2019.01.010 Cited by (18) \| Cite \| Source
Analysis Libraries for Molecular Trajectories: A Cross-Language Synopsis (book chapter) In Biomolecular Simulations Giorgino, Toni Springer New York (2019) 10.1007/978-1-4939-9608-7_20 Cited by (1) \| Cite \| Source
How to differentiate collective variables in free energy codes: Computer-algebra code generation and automatic differentiation (journal article) Giorgino, Toni Computer Physics Communications, volume 228 (2018). 10.1016/j.cpc.2018.02.017 Cited by (5) \| Cite \| Source \| Open Access
Synthesis, molecular modelling studies and biological evaluation of new oxoeicosanoid receptor 1 agonists (journal article) Stepniewski, Tomasz Maciej \| Torrens-Fontanals, Mariona \| Rodríguez-Espigares, Ismael \| Giorgino, Toni \| Primdahl, Karoline G. \| Vik, Anders \| Stenstrøm, Yngve \| Selent, Jana \| Hansen, Trond Vidar Bioorganic & Medicinal Chemistry, volume 26, issue 12, pages 3580-3587 (2018). 10.1016/j.bmc.2018.05.036 Cited by (10) \| Cite \| Source
A clinical-molecular prognostic model to predict survival in patients with post polycythemia vera and post essential thrombocythemia myelofibrosis (journal article) Passamonti, F \| Giorgino, T \| Mora, B \| Guglielmelli, P \| Rumi, E \| Maffioli, M \| Rambaldi, A \| Caramella, M \| Komrokji, R \| Gotlib, J \| ... \| Vannucchi, A M Leukemia, volume 31, issue 12, pages 2726-2731 (2017). 10.1038/leu.2017.169 Cited by (246) \| Cite \| Source
High-Throughput Automated Preparation and Simulation of Membrane Proteins with HTMD (journal article) Doerr, Stefan \| Giorgino, Toni \| Martínez-Rosell, Gerard \| Damas, João M. \| De Fabritiis, Gianni Journal of Chemical Theory and Computation, volume 13, issue 9, pages 4003-4011 (2017). 10.1021/acs.jctc.7b00480 Cited by (22) \| Cite \| Source
Drug Discovery and Molecular Dynamics: Methods, Applications and Perspective Beyond the Second Timescale (journal article) Martínez-Rosell, Gerard \| Giorgino, Toni \| J. Harvey, Matt \| de Fabritiis, Gianni Current Topics in Medicinal Chemistry (2017). 10.2174/1568026617666170414142549 Cited by (31) \| Cite \| Source
METAGUI 3: A graphical user interface for choosing the collective variables in molecular dynamics simulations (journal article) Giorgino, Toni \| Laio, Alessandro \| Rodriguez, Alex Computer Physics Communications, volume 217 (2017). 10.1016/j.cpc.2017.04.009 Cited by (32) \| Cite \| Source \| Open Access
PlayMolecule ProteinPrepare: A Web Application for Protein Preparation for Molecular Dynamics Simulations (journal article) Martínez-Rosell, Gerard \| Giorgino, Toni \| De Fabritiis, Gianni Journal of Chemical Information and Modeling, volume 57, issue 7, pages 1511-1516 (2017). 10.1021/acs.jcim.7b00190 Cited by (191) \| Cite \| Source