Reenal Pattni

ScholarGPS® ID: 63739138501696

Affiliation

Stanford University, Stanford, United States

Affiliation History

Field

Medicine

Discipline

Psychiatry

Top Specialties

Genomics | Neuron | Immortalised Cell Line

Metrics Summary

Publication Count

Predicted Citations

987

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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81. RESOLVING THE EXACT BREAKPOINTS AND SEQUENCE REARRANGEMENTS OF LARGE NEUROPSYCHIATRIC COPY NUMBER VARIATIONS (CNVS) AT SINGLE BASE-PAIR RESOLUTION USING CRISPR-TARGETED ULTRA-LONG READ SEQUENCING (CTLR-SEQ) (journal article) Zhou, Bo \| Shin, GiWon \| Vervoort, Lisanne \| Greer, Stephanie \| Huang, Yiling \| Roychowdhury, Tanmoy \| Pattni, Reenal \| Abyzov, Alexej \| Vermeesch, Joris \| Ji, Hanlee \| Urban, Alexander European Neuropsychopharmacology, volume 63 (2022). 10.1016/j.euroneuro.2022.07.166 Cite \| Source
Hyperexcitable arousal circuits drive sleep instability during aging (journal article) Li, Shi-Bin \| Damonte, Valentina Martinez \| Chen, Chong \| Wang, Gordon X. \| Kebschull, Justus M. \| Yamaguchi, Hiroshi \| Bian, Wen-Jie \| Purmann, Carolin \| Pattni, Reenal \| Urban, Alexander Eckehart \| ... \| de Lecea, Luis Science, volume 375, issue 6583 (2022). 10.1126/science.abh3021 Cited by (77) \| Cite \| Source
Increased activation product of Complement 4 protein in plasma of individuals with schizophrenia (journal article) Kalinowski, A. \| Liliental, J. \| Anker, L. \| Linkovski, O. \| Culbertson, C. \| Hall, J. \| Pattni, R. \| Sabatti, C. \| Noordsy, D. \| Hallmayer, J.F. \| ... \| Urban, A.E. Brain, Behavior, and Immunity, volume 98 (2021). 10.1016/j.bbi.2021.08.091 Cite \| Source
Increased activation product of complement 4 protein in plasma of individuals with schizophrenia (journal article) Kalinowski, Agnieszka \| Liliental, Joanna \| Anker, Lauren A. \| Linkovski, Omer \| Culbertson, Collin \| Hall, Jacob N. \| Pattni, Reenal \| Sabatti, Chiara \| Noordsy, Douglas \| Hallmayer, Joachim F. \| ... \| Urban, Alexander E. Translational Psychiatry, volume 11, issue 1 (2021). 10.1038/s41398-021-01583-5 Cited by (11) \| Cite \| Source
Network Effects of the 15q13.3 Microdeletion on the Transcriptome and Epigenome in Human-Induced Neurons (journal article) Zhang, Siming \| Zhang, Xianglong \| Purmann, Carolin \| Ma, Shining \| Shrestha, Anima \| Davis, Kasey N. \| Ho, Marcus \| Huang, Yiling \| Pattni, Reenal \| Wong, Wing Hung \| ... \| Urban, Alexander E. Biological Psychiatry, volume 89, issue 5, pages 497-509 (2021). 10.1016/j.biopsych.2020.06.021 Cited by (13) \| Cite \| Source
Machine learning reveals bilateral distribution of somatic L1 insertions in human neurons and glia (journal article) Zhu, Xiaowei \| Zhou, Bo \| Pattni, Reenal \| Gleason, Kelly \| Tan, Chunfeng \| Kalinowski, Agnieszka \| Sloan, Steven \| Fiston-Lavier, Anna-Sophie \| Mariani, Jessica \| Petrov, Dmitri \| ... \| Straub, Ri Nature Neuroscience, volume 24, issue 2, pages 186-196 (2021). 10.1038/s41593-020-00767-4 Cited by (17) \| Cite \| Source
Integrated functional genomic analyses of Klinefelter and Turner syndromes reveal global network effects of altered X chromosome dosage (journal article) Zhang, Xianglong \| Hong, David \| Ma, Shining \| Ward, Thomas \| Ho, Marcus \| Pattni, Reenal \| Duren, Zhana \| Stankov, Atanas \| Bade Shrestha, Sharon \| Hallmayer, Joachim \| ... \| Urban, Alexander E. Proceedings of the National Academy of Sciences, volume 117, issue 9, pages 4864-4873 (2020). 10.1073/pnas.1910003117 Cited by (58) \| Cite \| Source
17 MACHINE LEARNING REVEALS BILATERAL DISTRIBUTION OF SOMATIC L1 INSERTIONS IN HUMAN NEURONS AND GLIA (journal article) Zhu, Xiaowei \| Zhou, Bo \| Pattni, Reenal \| Gleason, Kelly \| Tan, Chunfeng \| Kalinowski, Agnieszka \| Sloan, Steven \| Fiston-Lavier, Anna-Sophie \| Mariani, Jessica \| Vogel, Hannes \| ... \| Urban, Alexander European Neuropsychopharmacology, volume 29 (2019). 10.1016/j.euroneuro.2019.07.158 Cited by (1) \| Cite \| Source
M12 APPROACHES TO TRANSCRIPTOME ANALYSIS OF HUMAN INDUCED NEURONS IN CO-CULTURE WITH MURINE GLIA TO MODEL FUNCTIONAL SYNAPSES (journal article) Purmann, Carolin \| Zhang, Xianglong \| Pak, Changhui \| Huang, Yiling \| Pattni, Reenal \| Grieder, Sarah \| Wernig, Marius \| Levinson, Douglas \| Aronow, Bruce \| Sudhof, Tom \| Urban, Alexander European Neuropsychopharmacology, volume 29 (2019). 10.1016/j.euroneuro.2019.08.112 Cite \| Source
S96SMALL-SCALE SOMATIC STRUCTURAL VARIANTS IN FETAL AND ADULT HUMAN BRAINS (journal article) Zhou, Bo \| Arthur, Joseph \| Pattni, Reenal \| Zhu, Xiaowei \| Wong, Wing \| Urban, Alexander European Neuropsychopharmacology, volume 29 (2019). 10.1016/j.euroneuro.2019.08.097 Cite \| Source
14 COMPARATIVE FUNCTIONAL GENOMICS ANALYSES OF THE 16P11.2 DELETION AND DUPLICATION CNVS IN A HUMAN IPSC-TO-INDUCED NEURON MODEL (journal article) Zhang, Xianglong \| Thomas, Ward \| Leung, Louis \| Zhou, Bo \| Muench, Kristin \| Plastini, Melanie \| Pattni, Reenal \| Ho, Steve \| Ho, Marcus \| Huang, Yiling \| ... \| Urban, Alexander European Neuropsychopharmacology, volume 29 (2019). 10.1016/j.euroneuro.2019.07.155 Cite \| Source
Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2 (journal article) Zhou, Bo \| Ho, Steve S \| Greer, Stephanie U \| Spies, Noah \| Bell, John M \| Zhang, Xianglong \| Zhu, Xiaowei \| Arthur, Joseph G \| Byeon, Seunggyu \| Pattni, Reenal \| ... \| Urban, Alexander E Nucleic Acids Research, volume 47, issue 8, pages 3846-3861 (2019). 10.1093/nar/gkz169 Cited by (35) \| Cite \| Source
Comprehensive, integrated, and phased whole-genome analysis of the primary ENCODE cell line K562 (journal article) Zhou, Bo \| Ho, Steve S. \| Greer, Stephanie U. \| Zhu, Xiaowei \| Bell, John M. \| Arthur, Joseph G. \| Spies, Noah \| Zhang, Xianglong \| Byeon, Seunggyu \| Pattni, Reenal \| ... \| Urban, Alexander E. Genome Research, volume 29, issue 3, pages 472-484 (2019). 10.1101/gr.234948.118 Cited by (61) \| Cite \| Source
SA94MACHINE LEARNING ANALYSIS OF ULTRA-DEEP WHOLE-GENOME SEQUENCING IN HUMAN BRAIN REVEALS SOMATIC GENOMIC RETROTRANSPOSITION IN GLIA AS WELL AS IN NEURONS (journal article) Urban, Alexander \| Zhu, Xiaowei \| Zhou, Bo \| Sloan, Steven \| Pattni, Reenal \| Fiston-Lavier, Anne-Sophie \| Snyder, Michael \| Petrov, Dmitri \| Abyzov, Alexej \| Vaccarino, Flora \| ... \| Levinson, Douglas European Neuropsychopharmacology, volume 29 (2019). 10.1016/j.euroneuro.2018.08.316 Cite \| Source
ANALYZING THE MOLECULAR NETWORK EFFECTS OF LARGE NEUROPSYCHIATRIC CNVS WITH IPSC BASED NEURONAL TISSUE CULTURE MODELS (journal article) Purmann, Carolin \| Ma, Shining \| Zhang, Siming \| Ward, Thomas \| Huang, Elaine \| Pattni, Reenal \| Hallmayer, Joachim \| Wong, Wing \| Urban, Alexander European Neuropsychopharmacology, volume 29 (2019). 10.1016/j.euroneuro.2018.07.080 Cite \| Source
Extensive and deep sequencing of the Venter/HuRef genome for developing and benchmarking genome analysis tools (journal article) Zhou, Bo \| Arthur, Joseph G. \| Ho, Steve S. \| Pattni, Reenal \| Huang, Yiling \| Wong, Wing H. \| Urban, Alexander E. Scientific Data, volume 5, issue 1 (2018). 10.1038/sdata.2018.261 Cited by (6) \| Cite \| Source
Whole-genome sequencing analysis of CNV using low-coverage and paired-end strategies is efficient and outperforms array-based CNV analysis (journal article) Zhou, Bo \| Ho, Steve S \| Zhang, Xianglong \| Pattni, Reenal \| Haraksingh, Rajini R \| Urban, Alexander E Journal of Medical Genetics, volume 55, issue 11, pages 735-743 (2018). 10.1136/jmedgenet-2018-105272 Cited by (62) \| Cite \| Source
1q21.1 microduplication: large verbal–nonverbal performance discrepancy and ddPCR assays of HYDIN/HYDIN2 copy number (journal article) Xavier, Jean \| Zhou, Bo \| Bilan, Frédéric \| Zhang, Xianglong \| Gilbert-Dussardier, Brigitte \| Viaux-Savelon, Sylvie \| Pattni, Reenal \| Ho, Steve S. \| Cohen, David \| Levinson, Douglas F. \| ... \| Laurent-Levinson, Claudine npj Genomic Medicine, volume 3, issue 1 (2018). 10.1038/s41525-018-0059-2 Cited by (8) \| Cite \| Source \| Open Access
Haplotype-resolved and integrated genome analysis of ENCODE cell line HepG2 (journal article) Zhou, Bo \| Ho, Steve S. \| Greer, Stephanie U. \| Spies, Noah \| Bell, John M. \| Zhang, Xianglong \| Zhu, Xiaowei \| Arthur, Joseph G. \| Byeon, Seunggyu \| Pattni, Reenal \| ... \| Urban, Alexander E. bioRxiv (2018). 10.1101/378497 Cited by (1) \| Cite \| Source \| Open Access
Sequencing of the Venter/HuRef genome using various strategies for the benchmarking of genome analysis tools (journal article) Zhou, Bo \| Arthur, Joseph G. \| Pattni, Reenal \| Ho, Steve S. \| Wong, Wing Hung \| Urban, Alexander E. bioRxiv (2018). 10.1101/281709 Cite \| Source \| Open Access