Allen G. Rodrigo

ScholarGPS® ID: 55414536953903

Affiliation
Australian National University, Acton, Australia
Affiliation History

Field
Life Sciences
Discipline
Biology and Biological Sciences
Top Specialties
Virus | Immunodeficiency | HIV | Infection | Bioinformatics | HIV/AIDS | Phylogenetics | Hepatitis | Mutation | Computational Biology | DNA | Microbiota
Metrics Summary
Publication Count
119
Predicted Citations
10,927
Predicted h-index
46
Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

  • Publications
  • Books
  • Patents
  • NIH/NSF
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ViPRA-Haplo: De Novo Reconstruction of Viral Populations Using Paired End Sequencing Data (journal article)
Li, Weiling | Malhotra, Raunaq | Wu, Steven | Jha, Manjari | Rodrigo, Allen | Poss, Mary | Acharya, Raj
IEEE/ACM Transactions on Computational Biology and Bioinformatics, volume 21, issue 3, pages 492-500 (2024).
10.1109/TCBB.2024.3374595
Cite | Source
Modelling the evolution of holobionts: an incomplete review (journal article)
Rodrigo, Allen G.
New Zealand Journal of Zoology (2023).
10.1080/03014223.2023.2255142
Cite | Source
Can Stomach Content and Microbiomes of Tuna Provide Near Real-Time Detection of Ecosystem Composition in the Pacific Ocean? (journal article)
Trujillo-González, Alejandro | Li, Teng | Potts, Joanne | Nicol, Simon | Allain, Valerie | Godwin, Sam C. | Vourey, Elodie | Portal, Annie | Kumasi, Brian | Usu, Thomas | ... | Gleeson, Dianne
Frontiers in Marine Science, volume 9 (2022).
10.3389/fmars.2022.811532
Cited by (1) | Cite | Source
pgHMA: Application of the heteroduplex mobility assay analysis in phylogenetics and population genetics (journal article)
Li, Teng | Wong, Thomas K. F. | Ranjard, Louis | Rodrigo, Allen G.
Molecular Ecology Resources, volume 22, issue 2, pages 653-663 (2022).
10.1111/1755-0998.13508
Cite | Source
Genetic Variants of CLPP and M1AP Are Associated With Risk of Non-Small Cell Lung Cancer (journal article)
Li, Xianghan | Zou, Yiran | Li, Teng | Wong, Thomas K. F. | Bushey, Ryan T. | Campa, Michael J. | Gottlin, Elizabeth B. | Liu, Hongliang | Wei, Qingyi | Rodrigo, Allen | Patz, Edward F.
Frontiers in Oncology, volume 11 (2021).
10.3389/fonc.2021.709829
Cited by (2) | Cite | Source
An assembly-free method of phylogeny reconstruction using short-read sequences from pooled samples without barcodes (journal article)
Wong, Thomas K. F. | Li, Teng | Ranjard, Louis | Wu, Steven H. | Sukumaran, Jeet | Rodrigo, Allen G.
PLOS Computational Biology, volume 17, issue 9, pages e1008949- (2021).
10.1371/journal.pcbi.1008949
Cite | Source
The Genetics of HIV-1 (book chapter)
In The Human Immunodeficiency Virus
Anderson, JON P. | Rain, Matthew | Shriner, Daniel | Rodrigo, Allen G. | Wang, Yang | Nickle, David | Learn, Gerald H. | Naugler, Willscott E. | Mullins, James I.
Princeton University Press (2021)
10.2307/j.ctv1dwq0s6.6
Cite | Source
Effective machine-learning assembly for next-generation amplicon sequencing with very low coverage (journal article)
Ranjard, Louis | Wong, Thomas K. F. | Rodrigo, Allen G.
BMC Bioinformatics, volume 20, issue 1 (2019).
10.1186/s12859-019-3287-2
Cited by (3) | Cite | Source
Neutral models of short-term microbiome dynamics with host subpopulation structure and migration limitation (journal article)
Zeng, Qinglong | Rodrigo, Allen
Microbiome, volume 6, issue 1 (2018).
10.1186/s40168-018-0464-x
Cited by (17) | Cite | Source | Open Access
HaploJuice : accurate haplotype assembly from a pool of sequences with known relative concentrations (journal article)
Wong, Thomas K. F. | Ranjard, Louis | Lin, Yu | Rodrigo, Allen G.
BMC Bioinformatics, volume 19, issue 1 (2018).
10.1186/s12859-018-2424-7
Cited by (2) | Cite | Source
Effective Machine-Learning Assembly For Next-Generation Sequencing With Very Low Coverage (journal article)
Ranjard, Louis | Wong, Tom | Rodrigo, Allen G.
bioRxiv (2018).
10.1101/393116
Cite | Source | Open Access
Bamboo Specialists from Two Mammalian Orders (Primates, Carnivora) Share a High Number of Low-Abundance Gut Microbes (journal article)
McKenney, Erin A. | Maslanka, Michael | Rodrigo, Allen | Yoder, Anne D.
Microbial Ecology, volume 76, issue 1, pages 272-284 (2018).
10.1007/s00248-017-1114-8
Cited by (35) | Cite | Source
Feeding strategy shapes gut metagenomic enrichment and functional specialization in captive lemurs (journal article)
McKenney, E. A. | O'Connell, Thomas M. | Rodrigo, Allen | Yoder, Anne D.
Gut Microbes, volume 9, issue 3, pages 202-217 (2018).
10.1080/19490976.2017.1408762
Cited by (17) | Cite | Source
Reassembling haplotypes in a mixture of pooled amplicons when the relative concentrations are known: A proof-of-concept study on the efficient design of next-generation sequencing strategies (journal article)
Ranjard, Louis | Wong, Thomas K. F. | Rodrigo, Allen G.
PLOS ONE, volume 13, issue 4, pages e0195090- (2018).
10.1371/journal.pone.0195090
Cited by (4) | Cite | Source | Open Access
Complete mitochondrial genome of the green-lipped mussel, Perna canaliculus (Mollusca: Mytiloidea), from long nanopore sequencing reads (journal article)
Ranjard, Louis | Wong, Thomas K. F. | Külheim, Carsten | Rodrigo, Allen G. | Ragg, Norman L. C. | Patel, Selina | Dunphy, Brendon J.
Mitochondrial DNA Part B, volume 3, issue 1, pages 175-176 (2018).
10.1080/23802359.2018.1437810
Cited by (12) | Cite | Source
Models of microbiome evolution incorporating host and microbial selection (journal article)
Zeng, Qinglong | Wu, Steven | Sukumaran, Jeet | Rodrigo, Allen
Microbiome, volume 5, issue 1 (2017).
10.1186/s40168-017-0343-x
Cited by (34) | Cite | Source | Open Access
The Evolutionary Value of Helpful Microbes: A Response to Shapira (journal article)
Rodrigo, Allen | Rogers, Madison | Bohlig, Blake
Trends in Ecology & Evolution, volume 32, issue 2, pages 84-85 (2017).
10.1016/j.tree.2016.11.002
Cited by (6) | Cite | Source
Identifying predictors of time-inhomogeneous viral evolutionary processes (journal article)
Bielejec, Filip | Baele, Guy | Rodrigo, Allen G. | Suchard, Marc A. | Lemey, Philippe
Virus Evolution, volume 2, issue 2, pages vew023- (2016).
10.1093/ve/vew023
Cited by (11) | Cite | Source | Open Access
Estimation of evolutionary parameters using short, random and partial sequences from mixed samples of anonymous individuals (journal article)
Wu, Steven H. | Rodrigo, Allen G.
BMC Bioinformatics, volume 16, issue 1 (2015).
10.1186/s12859-015-0810-y
Cite | Source | Open Access
Linking Evolution, Ecology, and Health: TriCEM (journal article)
Nunn, Charles L. | Alberts, Susan C. | McClain, Craig R. | Meshnick, Steven R. | Vision, Todd J. | Wiegmann, Brian M. | Rodrigo, Allen G.
BioScience, volume 65, issue 8, pages 748-749 (2015).
10.1093/biosci/biv086
Cite | Source | Open Access