Brendan Mumey

ScholarGPS® ID: 52107818108052

Affiliation

Montana State University, Bozeman, United States

Affiliation History

Field

Engineering and Computer Science

Discipline

Computer Science

Top Specialties

Metrics Summary

Publication Count

Predicted Citations

1,051

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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Width Helps and Hinders Splitting Flows (journal article) Cáceres, Manuel \| Cairo, Massimo \| Grigorjew, Andreas \| Khan, Shahbaz \| Mumey, Brendan \| Rizzi, Romeo \| Tomescu, Alexandru I. \| Williams, Lucia ACM Transactions on Algorithms, volume 20, issue 2, pages 1-20 (2024). 10.1145/3641820 Cite \| Source
Hijacking a rapid and scalable metagenomic method reveals subgenome dynamics and evolution in polyploid plants (journal article) Reynolds, Gillian \| Mumey, Brendan \| Strnadova‐Neeley, Veronika \| Lachowiec, Jennifer Applications in Plant Sciences (2024). 10.1002/aps3.11581 Cite \| Source
Graph-Based Machine Learning Approaches for Pangenomics (book chapter) In Machine Learning Methods for Multi-Omics Data Integration Kahanda, Indika \| Mudge, Joann \| Manuweera, Buwani \| Ramaraj, Thiruvarangan \| Cleary, Alan \| Mumey, Brendan Springer International Publishing (2024) 10.1007/978-3-031-36502-7_7 Cite \| Source
Development of an ontology for biofilms (conference) Ramaraj, Thiruvarangan \| Liu, Bo Wen \| Gibbs, Britney \| Mendoza, Azalea \| Millman, David L. \| Mumey, Brendan \| Fields, Matthew \| Bell, Callum 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (2023) Istanbul, Turkiye 10.1109/BIBM58861.2023.10385562 Cite \| Source
Genotype-to-Phenotype Associations with Frequented Region Variants (conference) Kahanda, Indika \| Manuweera, Buwani \| Mumey, Brendan \| Ramaraj, Thiruvarangan \| Cleary, Alan \| Mudge, Joann 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (2023) Istanbul, Turkiye 10.1109/BIBM58861.2023.10385551 Cite \| Source
Efficient Minimum Flow Decomposition via Integer Linear Programming (journal article) Dias, Fernando H.C. \| Williams, Lucia \| Mumey, Brendan \| Tomescu, Alexandru I. Journal of Computational Biology, volume 29, issue 11, pages 1252-1267 (2022). 10.1089/cmb.2022.0257 Cited by (3) \| Cite \| Source
Search for a Shared Genetic or Biochemical Basis for Biofilm Tolerance to Antibiotics across Bacterial Species (journal article) Stewart, Philip S. \| Williamson, Kerry S. \| Boegli, Laura \| Hamerly, Timothy \| White, Ben \| Scott, Liam \| Hu, Xiao \| Mumey, Brendan M. \| Franklin, Michael J. \| Bothner, Brian \| ... \| James, Garth A. Antimicrobial Agents and Chemotherapy, volume 66, issue 4 (2022). 10.1128/aac.00021-22 Cited by (4) \| Cite \| Source
Sparsifying, Shrinking and Splicing for Minimum Path Cover in Parameterized Linear Time (book chapter) In Proceedings of the 2022 Annual ACM-SIAM Symposium on Discrete Algorithms (SODA) Cáceres, Manuel \| Cairo, Massimo \| Mumey, Brendan \| Rizzi, Romeo \| Tomescu, Alexandru I. Society for Industrial and Applied Mathematics (2022) 10.1137/1.9781611977073.18 Cited by (10) \| Cite \| Source
Fast, Flexible, and Exact Minimum Flow Decompositions via ILP (book chapter) In Research in Computational Molecular Biology Dias, Fernando H. C. \| Williams, Lucia \| Mumey, Brendan \| Tomescu, Alexandru I. Springer International Publishing (2022) 10.1007/978-3-031-04749-7_14 Cited by (3) \| Cite \| Source
Flow Decomposition with Subpath Constraints (journal article) Williams, Lucia \| Tomescu, Alexandru I. Ioan \| Mumey, Brendan IEEE/ACM Transactions on Computational Biology and Bioinformatics (2022). 10.1109/TCBB.2022.3147697 Cite \| Source
Genetic dissection of natural variation in oilseed traits of camelina by whole‐genome resequencing and QTL mapping (journal article) Li, Huang \| Hu, Xiao \| Lovell, John T. \| Grabowski, Paul P. \| Mamidi, Sujan \| Chen, Cindy \| Amirebrahimi, Mojgan \| Kahanda, Indika \| Mumey, Brendan \| Barry, Kerrie \| ... \| Lu, Chaofu The Plant Genome, volume 14, issue 2 (2021). 10.1002/tpg2.20110 Cited by (24) \| Cite \| Source
Safety in multi-assembly via paths appearing in all path covers of a DAG (journal article) Caceres, Manuel \| Mumey, Brendan \| Husic, Edin \| Rizzi, Romeo \| Cairo, Massimo \| Sahlin, Kristoffer \| Tomescu, Alexandru I. Ioan IEEE/ACM Transactions on Computational Biology and Bioinformatics (2021). 10.1109/TCBB.2021.3131203 Cited by (2) \| Cite \| Source
A Linear-Time Parameterized Algorithm for Computing the Width of a DAG (book chapter) In Graph-Theoretic Concepts in Computer Science Cáceres, Manuel \| Cairo, Massimo \| Mumey, Brendan \| Rizzi, Romeo \| Tomescu, Alexandru I. Springer International Publishing (2021) 10.1007/978-3-030-86838-3_20 Cited by (1) \| Cite \| Source
Maximal Perfect Haplotype Blocks with Wildcards (journal article) Williams, Lucia \| Mumey, Brendan iScience, volume 23, issue 6, pages 101149- (2020). 10.1016/j.isci.2020.101149 Cited by (6) \| Cite \| Source
Scheduling Jobs with Precedence Constraints to Minimize Peak Demand (book chapter) In Combinatorial Optimization and Applications Pryor, Elliott \| Mumey, Brendan \| Yaw, Sean Springer International Publishing (2020) 10.1007/978-3-030-64843-5_10 Cited by (1) \| Cite \| Source
Extending Maximal Perfect Haplotype Blocks to the Realm of Pangenomics (book chapter) In Algorithms for Computational Biology Williams, Lucia \| Mumey, Brendan Springer International Publishing (2020) 10.1007/978-3-030-42266-0_4 Cited by (1) \| Cite \| Source
RNA Transcript Assembly Using Inexact Flows (conference) Williams, Lucia \| Reynolds, Gillian \| Mumey, Brendan 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (2019) San Diego, CA, USA 10.1109/BIBM47256.2019.8983180 Cited by (6) \| Cite \| Source
Pangenome-Wide Association Studies with Frequented Regions (conference) Manuweera, Buwani \| Mudge, Joann \| Kahanda, Indika \| Mumey, Brendan \| Ramaraj, Thiruvarangan \| Cleary, Alan BCB '19: 10th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics (2019) Niagara Falls NY USA 10.1145/3307339.3343478 Cited by (8) \| Cite \| Source
Exploring Frequented Regions in Pan-Genomic Graphs (journal article) Cleary, Alan \| Ramaraj, Thiruvarangan \| Kahanda, Indika \| Mudge, Joann \| Mumey, Brendan IEEE/ACM Transactions on Computational Biology and Bioinformatics, volume 16, issue 5, pages 1424-1435 (2019). 10.1109/TCBB.2018.2864564 Cited by (6) \| Cite \| Source
Physiological dynamic compression regulates central energy metabolism in primary human chondrocytes (journal article) Salinas, Daniel \| Mumey, Brendan M. \| June, Ronald K. Biomechanics and Modeling in Mechanobiology, volume 18, issue 1, pages 69-77 (2019). 10.1007/s10237-018-1068-x Cited by (19) \| Cite \| Source

Title	Investigators	Year	Expiration	Amount
REU Site: Research Experiences in Cybersecurity Algorithms	Izurieta, Clemente \| Mumey, Brendan	03-01-2020	02-28-2023	$404,702
Collaborative Research: Innovation: Pioneering New Approaches to Explore Pangenomic Space at Scale	Mumey, Brendan \| Kahanda, Indika	07-15-2018	06-30-2022	$379,159
ABI EAGER: New Tools for Pan-Genomics Across Phylogenetic Space	Mumey, Brendan \| Mudge, Joann \| Ramaraj, Thiruvarangan	07-15-2015	06-30-2017	$240,526
NeTS-NBD: Physically Aware Agile Networking	Mumey, Brendan \| Wolff, Richard	08-15-2006	07-31-2010	$399,967
Biological Information Technology Systems - BITS: Algorithms for Real-time Decoding and Modulation of Neural Spike Trains	Mumey, Brendan \| Miller, John \| Snider, Ross \| Gedeon, Tomas	03-01-2002	02-28-2007	$1,400,347
SGER: Computational Neuroscience Problems with Application to Microarray Expression Analysis	Mumey, Brendan	10-01-1999	09-30-2001	$95,649

Title	Investigators	Year	Cost	Agency
MT INBRE BIOINFORMATICS CORE	Mumey, Brendan M	2007	$270,572	NATIONAL CENTER FOR RESEARCH RESOURCES
MT INBRE BIOINFORMATICS CORE	Mumey, Brendan M	2006	$161,539	NATIONAL CENTER FOR RESEARCH RESOURCES
MONTANA INBRE: MSU: BIOINFORMATICS CORE	Mumey, Brendan M	2005	$187,835	NATIONAL CENTER FOR RESEARCH RESOURCES