Sophia M. Yi

ScholarGPS® ID: 48573665833100

Affiliation

Yale University, New Haven, United States

Affiliation History

Field

Life Sciences

Discipline

Biochemistry

Top Specialties

Nanowire | Bacillus Subtilis

Metrics Summary

Publication Count

Predicted Citations

891

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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A 300-fold conductivity increase in microbial cytochrome nanowires due to temperature-induced restructuring of hydrogen bonding networks (journal article) Dahl, Peter J. \| Yi, Sophia M. \| Gu, Yangqi \| Acharya, Atanu \| Shipps, Catharine \| Neu, Jens \| O’Brien, J. Patrick \| Morzan, Uriel N. \| Chaudhuri, Subhajyoti \| Guberman-Pfeffer, Matthew J. \| ... \| Malvankar, Nikhil S. Science Advances, volume 8, issue 19 (2022). 10.1126/sciadv.abm7193 Cited by (31) \| Cite \| Source
Structure of Geobacter pili reveals secretory rather than nanowire behaviour (journal article) Gu, Yangqi \| Srikanth, Vishok \| Salazar-Morales, Aldo I. \| Jain, Ruchi \| O’Brien, J. Patrick \| Yi, Sophia M. \| Soni, Rajesh Kumar \| Samatey, Fadel A. \| Yalcin, Sibel Ebru \| Malvankar, Nikhil S. Nature, volume 597, issue 7876, pages 430-434 (2021). 10.1038/s41586-021-03857-w Cited by (107) \| Cite \| Source
Intrinsic electronic conductivity of individual atomically resolved amyloid crystals reveals micrometer-long hole hopping via tyrosines (journal article) Shipps, Catharine \| Kelly, H. Ray \| Dahl, Peter J. \| Yi, Sophia M. \| Vu, Dennis \| Boyer, David \| Glynn, Calina \| Sawaya, Michael R. \| Eisenberg, David \| Batista, Victor S. \| Malvankar, Nikhil S. Proceedings of the National Academy of Sciences, volume 118, issue 2 (2021). 10.1073/pnas.2014139118 Cited by (43) \| Cite \| Source
Electric field stimulates production of highly conductive microbial OmcZ nanowires (journal article) Yalcin, Sibel Ebru \| O’Brien, J. Patrick \| Gu, Yangqi \| Reiss, Krystle \| Yi, Sophia M. \| Jain, Ruchi \| Srikanth, Vishok \| Dahl, Peter J. \| Huynh, Winston \| Vu, Dennis \| ... \| Malvankar, Nikhil S. Nature Chemical Biology, volume 16, issue 10, pages 1136-1142 (2020). 10.1038/s41589-020-0623-9 Cited by (117) \| Cite \| Source
Probing the Role of Metal Coordination and pH in Assembly and Function of Cytochrome Nanowires (journal article) Srikanth, Vishok \| Gu, Yangqi \| O'Brien, J. Patrick \| Jain, Ruchi \| Ebru Yalcin, Sibel \| Yi, Sophia M. \| Samatey, Fadel A. \| Malvankar, Nikhil S. Biophysical Journal, volume 118, issue 3, pages 335a-336a (2020). 10.1016/j.bpj.2019.11.1872 Cite \| Source
Structure of the cytochrome aa 3 -600 heme-copper menaquinol oxidase bound to inhibitor HQNO shows TM0 is part of the quinol binding site (journal article) Xu, Jingjing \| Ding, Ziqiao \| Liu, Bing \| Yi, Sophia M. \| Li, Jiao \| Zhang, Zhengguang \| Liu, Yuchen \| Li, Jin \| Liu, Liu \| Zhou, Aiwu \| ... \| Zhu, Jiapeng Proceedings of the National Academy of Sciences, volume 117, issue 2, pages 872-876 (2020). 10.1073/pnas.1915013117 Cited by (21) \| Cite \| Source
The Ubiquinol Binding Site of Cytochrome bo3 from Escherichia coli Accommodates Menaquinone and Stabilizes a Functional Menasemiquinone (journal article) Ding, Ziqiao \| Sun, Chang \| Yi, Sophia M. \| Gennis, Robert B. \| Dikanov, Sergei A. Biochemistry, volume 58, issue 45, pages 4559-4569 (2019). 10.1021/acs.biochem.9b00750 Cited by (6) \| Cite \| Source
Terahertz-Conductivity in Biological Nanowire-Networks (conference) Neu, Jens \| Yi, Sophia M. \| Gu, Yangqi \| O'Brien, J. Patrick \| Srikanth, Vishok \| Vu, Dennis \| Schmuttenmaer, Charles A. \| Malvankar, Nikhil S. 2019 44th International Conference on Infrared, Millimeter, and Terahertz Waves (IRMMW-THz) (2019) Paris, France 10.1109/IRMMW-THz.2019.8874204 Cited by (1) \| Cite \| Source
Structure of Microbial Nanowires Reveals Stacked Hemes that Transport Electrons over Micrometers (journal article) Wang, Fengbin \| Gu, Yangqi \| O’Brien, J. Patrick \| Yi, Sophia M. \| Yalcin, Sibel Ebru \| Srikanth, Vishok \| Shen, Cong \| Vu, Dennis \| Ing, Nicole L. \| Hochbaum, Allon I. \| ... \| Malvankar, Nikhil S. Cell, volume 177, issue 2, pages 361-369.e10 (2019). 10.1016/j.cell.2019.03.029 Cited by (356) \| Cite \| Source
Plasticity in the High Affinity Menaquinone Binding Site of the Cytochrome aa3 -600 Menaquinol Oxidase from Bacillus subtilis (journal article) Yi, Sophia M. \| Taguchi, Alexander T. \| Samoilova, Rimma I. \| O’Malley, Patrick J. \| Gennis, Robert B. \| Dikanov, Sergei A. Biochemistry, volume 54, issue 32, pages 5030-5044 (2015). 10.1021/acs.biochem.5b00528 Cited by (8) \| Cite \| Source
Replacing Arg70 by Histidine in The Cytochrome Aa3 ‐600 Menaquinol Oxidase from Bacillus Subtilis Changes The Nitrogen Interacting with The Semiquinone Formed at The Qh Site But Does Not Eliminate Catalytic Function (journal article) Yi, Sophia \| Taguchi, Alexander \| Dikanov, Sergei \| Gennis, Robert The FASEB Journal, volume 29, issue S1 (2015). 10.1096/fasebj.29.1_supplement.lb110 Cite \| Source
Characterization of the Semiquinone Radical Stabilized by the Cytochrome aa3-600 Menaquinol Oxidase of Bacillus subtilis (journal article) Yi, Sophia M. \| Narasimhulu, Kuppala V. \| Samoilova, Rimma I. \| Gennis, Robert B. \| Dikanov, Sergei A. Journal of Biological Chemistry, volume 285, issue 24, pages 18241-18251 (2010). 10.1074/jbc.M110.116186 Cited by (23) \| Cite \| Source \| Open Access