Mohammad Lotfollahi

ScholarGPS® ID: 46679151868447

Affiliation

Technical University of Munich, Munich, Germany

Affiliation History

Field

Life Sciences

Discipline

Biology and Biological Sciences

Top Specialties

Enhanced Oil Recovery | Foam | Polymer | Porous Medium

Metrics Summary

Publication Count

Predicted Citations

1,752

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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Deep generative modeling of transcriptional dynamics for RNA velocity analysis in single cells (journal article) Gayoso, Adam \| Weiler, Philipp \| Lotfollahi, Mohammad \| Klein, Dominik \| Hong, Justin \| Streets, Aaron \| Theis, Fabian J. \| Yosef, Nir Nature Methods, volume 21, issue 1, pages 50-59 (2024). 10.1038/s41592-023-01994-w Cited by (5) \| Cite \| Source
Population-level integration of single-cell datasets enables multi-scale analysis across samples (journal article) De Donno, Carlo \| Hediyeh-Zadeh, Soroor \| Moinfar, Amir Ali \| Wagenstetter, Marco \| Zappia, Luke \| Lotfollahi, Mohammad \| Theis, Fabian J. Nature Methods, volume 20, issue 11, pages 1683-1692 (2023). 10.1038/s41592-023-02035-2 Cited by (7) \| Cite \| Source
Predicting cellular responses to complex perturbations in high‐throughput screens (journal article) Lotfollahi, Mohammad \| Klimovskaia Susmelj, Anna \| De Donno, Carlo \| Hetzel, Leon \| Ji, Yuge \| Ibarra, Ignacio L \| Srivatsan, Sanjay R \| Naghipourfar, Mohsen \| Daza, Riza M \| Martin, Beth \| ... \| Theis, Fabian J Molecular Systems Biology, volume 19, issue 6 (2023). 10.15252/msb.202211517 Cited by (30) \| Cite \| Source
Biologically informed deep learning to query gene programs in single-cell atlases (journal article) Lotfollahi, Mohammad \| Rybakov, Sergei \| Hrovatin, Karin \| Hediyeh-zadeh, Soroor \| Talavera-López, Carlos \| Misharin, Alexander V. \| Theis, Fabian J. Nature Cell Biology (2023). 10.1038/s41556-022-01072-x Cited by (17) \| Cite \| Source
A Python library for probabilistic analysis of single-cell omics data (journal article) Gayoso, Adam \| Lopez, Romain \| Xing, Galen \| Boyeau, Pierre \| Valiollah Pour Amiri, Valeh \| Hong, Justin \| Wu, Katherine \| Jayasuriya, Michael \| Mehlman, Edouard \| Langevin, Maxime \| ... \| Yosef, Nir Nature Biotechnology, volume 40, issue 2, pages 163-166 (2022). 10.1038/s41587-021-01206-w Cited by (145) \| Cite \| Source
Squidpy: a scalable framework for spatial omics analysis (journal article) Palla, Giovanni \| Spitzer, Hannah \| Klein, Michal \| Fischer, David \| Schaar, Anna Christina \| Kuemmerle, Louis Benedikt \| Rybakov, Sergei \| Ibarra, Ignacio L. \| Holmberg, Olle \| Virshup, Isaac \| ... \| Theis, Fabian J. Nature Methods, volume 19, issue 2, pages 171-178 (2022). 10.1038/s41592-021-01358-2 Cited by (230) \| Cite \| Source
Mapping single-cell data to reference atlases by transfer learning (journal article) Lotfollahi, Mohammad \| Naghipourfar, Mohsen \| Luecken, Malte D. \| Khajavi, Matin \| Büttner, Maren \| Wagenstetter, Marco \| Avsec, Žiga \| Gayoso, Adam \| Yosef, Nir \| Interlandi, Marta \| ... \| Theis, Fabian J. Nature Biotechnology, volume 40, issue 1, pages 121-130 (2022). 10.1038/s41587-021-01001-7 Cited by (170) \| Cite \| Source
Machine learning for perturbational single-cell omics (journal article) Ji, Yuge \| Lotfollahi, Mohammad \| Wolf, F. Alexander \| Theis, Fabian J. Cell Systems, volume 12, issue 6, pages 522-537 (2021). 10.1016/j.cels.2021.05.016 Cited by (44) \| Cite \| Source
Conditional out-of-distribution generation for unpaired data using transfer VAE (journal article) Lotfollahi, Mohammad \| Naghipourfar, Mohsen \| Theis, Fabian J \| Wolf, F Alexander Bioinformatics, volume 36, issue Supplement_2, pages i610-i617 (2020). 10.1093/bioinformatics/btaa800 Cited by (45) \| Cite \| Source
scGen predicts single-cell perturbation responses (journal article) Lotfollahi, Mohammad \| Wolf, F. Alexander \| Theis, Fabian J. Nature Methods, volume 16, issue 8, pages 715-721 (2019). 10.1038/s41592-019-0494-8 Cited by (193) \| Cite \| Source
Fifty Years of Field Observations: Lessons for Co2 Storage from Co2 Enhanced Oil Recovery (journal article) Lake, Larry \| Lotfollahi, Mohammad \| Bryant, Steven SSRN Electronic Journal (2019). 10.2139/ssrn.3366254 Cited by (15) \| Cite \| Source
CO2 Enhanced Oil Recovery Experience and its Messages for CO2 Storage (book chapter) In Science of Carbon Storage in Deep Saline Formations Lake, Larry W. \| Lotfollahi, Mohammad \| Bryant, Steven L. Elsevier (2019) 10.1016/B978-0-12-812752-0.00002-2 Cited by (24) \| Cite \| Source
Generative modeling and latent space arithmetics predict single-cell perturbation response across cell types, studies and species (journal article) Lotfollahi, Mohammad \| Wolf, F. Alexander \| Theis, Fabian J. bioRxiv (2018). 10.1101/478503 Cited by (13) \| Cite \| Source
An Integrated Flow-Geomechanical Analysis of Flue Gas Injection in Cranfield (conference) Lu, Xueying \| Lotfollahi, Mohammad \| Ganis, Benjamin \| Min, Baehyun \| Wheeler, Mary F. SPE Improved Oil Recovery Conference (2018) Tulsa, Oklahoma, USA 10.2118/190300-MS Cited by (5) \| Cite \| Source
Identification and Evaluation of Viscoelastic Surfactants Including Smart Viscoelastic Systems for Generation and Stabilization of Ultra-Dry N2 and CO2 Foam for Fracturing Fluids and Proppant Transport (conference) Alzobaidi, Shehab \| Lotfollahi, Mohammad \| Lu, Congwen \| Bloom, Michael \| Zhang, Xuan \| Prodanovic, Masa \| Johnston, Keith \| DiCarlo, David Unconventional Resources Technology Conference (2018) Houston, Texas, USA 10.15530/urtec-2018-2896923 Cited by (6) \| Cite \| Source
Carbon Dioxide-in-Brine Foams at High Temperatures and Extreme Salinities Stabilized with Silica Nanoparticles (journal article) Alzobaidi, Shehab \| Lotfollahi, Mohammad \| Kim, Ijung \| Johnston, Keith P. \| DiCarlo, David A. Energy & Fuels, volume 31, issue 10, pages 10680-10690 (2017). 10.1021/acs.energyfuels.7b01814 Cited by (47) \| Cite \| Source
Optimization of Surfactant Flooding in Tight Oil Reservoirs (conference) Lotfollahi, Mohammad \| Beygi, Mohammad Reza \| Abouie, Ali \| Sepehrnoori, Kamy \| DiCarlo, David A. Unconventional Resources Technology Conference (2017) Austin, Texas, USA 10.15530/urtec-2017-2696038 Cited by (20) \| Cite \| Source
Foam Generation Hysteresis in Porous Media: Experiments and New Insights (journal article) Lotfollahi, Mohammad \| Kim, Ijung \| Beygi, Mohammad R. \| Worthen, Andrew J. \| Huh, Chun \| Johnston, Keith P. \| Wheeler, Mary F. \| DiCarlo, David A. Transport in Porous Media, volume 116, issue 2, pages 687-703 (2017). 10.1007/s11242-016-0796-6 Cited by (24) \| Cite \| Source
Nanoparticle-stabilized Emulsions for Improved Mobility Control for Adverse-mobility Waterflooding (conference) Kim, I. \| Worthen, A.J. \| Lotfollahi, M. \| Johnston, K.P. \| DiCarlo, D.A. \| Huh, C. IOR 2017 - 19th European Symposium on Improved Oil Recovery (2017) Stavanger, Norway 10.3997/2214-4609.201700314 Cited by (20) \| Cite \| Source
Mechanistic Simulation of Polymer Injectivity in Field Tests (journal article) Lotfollahi, Mohammad \| Farajzadeh, Rouhi \| Delshad, Mojdeh \| Al-Abri, Al-Khalil \| Wassing, Bart M. \| Al-Mjeni, Rifaat \| Awan, Kamran \| Bedrikovetsky, Pavel SPE Journal, volume 21, issue 04, pages 1178-1191 (2016). 10.2118/174665-PA Cited by (67) \| Cite \| Source