Sean Davis

ScholarGPS® ID: 44699202296324

Affiliation

National Cancer Institute, National Institutes of Health, Bethesda, United States

Affiliation History

Field

Life Sciences

Discipline

Genetics

Top Specialties

Metrics Summary

Publication Count

Predicted Citations

18,063

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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Toward a gold standard for benchmarking gene set enrichment analysis (journal article) Geistlinger, Ludwig \| Csaba, Gergely \| Santarelli, Mara \| Ramos, Marcel \| Schiffer, Lucas \| Turaga, Nitesh \| Law, Charity \| Davis, Sean \| Carey, Vincent \| Morgan, Martin \| ... \| Waldron, Levi Briefings in Bioinformatics, volume 22, issue 1, pages 545-556 (2021). 10.1093/bib/bbz158 Cited by (63) \| Cite \| Source
From Patient Engagement to Precision Oncology: Leveraging Informatics to Advance Cancer Care (journal article) Griffin, Ashley C. \| Topaloglu, Umit \| Davis, Sean \| Chung, Arlene E. Yearbook of Medical Informatics, volume 29, issue 01, pages 235-242 (2020). 10.1055/s-0040-1701983 Cited by (5) \| Cite \| Source
HGNChelper: identification and correction of invalid gene symbols for human and mouse (journal article) Oh, Sehyun \| Abdelnabi, Jasmine \| Al-Dulaimi, Ragheed \| Aggarwal, Ayush \| Ramos, Marcel \| Davis, Sean \| Riester, Markus \| Waldron, Levi F1000Research, volume 9 (2020). 10.12688/f1000research.28033.2 Cited by (1) \| Cite \| Source
HGNChelper: identification and correction of invalid gene symbols for human and mouse (journal article) Oh, Sehyun \| Abdelnabi, Jasmine \| Al-Dulaimi, Ragheed \| Aggarwal, Ayush \| Ramos, Marcel \| Davis, Sean \| Riester, Markus \| Waldron, Levi F1000Research, volume 9 (2020). 10.12688/f1000research.28033.1 Cited by (13) \| Cite \| Source
BiocPkgTools: Toolkit for mining the Bioconductor package ecosystem (journal article) Su, Shian \| Carey, Vincent J. \| Shepherd, Lori \| Ritchie, Matthew \| Morgan, Martin T. \| Davis, Sean F1000Research, volume 8 (2019). 10.12688/f1000research.19410.1 Cited by (1) \| Cite \| Source
restfulSE: A semantically rich interface for cloud-scale genomics with Bioconductor (journal article) Gopaulakrishnan, Shweta \| Pollack, Samuela \| Stubbs, BJ \| Pagès, Hervé \| Readey, John \| Davis, Sean \| Waldron, Levi \| Morgan, Martin \| Carey, Vincent F1000Research, volume 8 (2019). 10.12688/f1000research.17518.1 Cite \| Source
Orchestrating a community-developed computational workshop and accompanying training materials (journal article) Davis, Sean \| Ramos, Marcel \| Shepherd, Lori \| Turaga, Nitesh \| Geistlinger, Ludwig \| Morgan, Martin T. \| Haibe-Kains, Benjamin \| Waldron, Levi F1000Research, volume 7 (2018). 10.12688/f1000research.16516.1 Cited by (2) \| Cite \| Source
Resources for Interpreting Variants in Precision Genomic Oncology Applications (journal article) Tsang, Hsinyi \| Addepalli, KanakaDurga \| Davis, Sean R. Frontiers in Oncology, volume 7 (2017). 10.3389/fonc.2017.00214 Cited by (18) \| Cite \| Source \| Open Access
Autoreactive T Cells and Chronic Fungal Infection Drive Esophageal Carcinogenesis (journal article) Zhu, Feng \| Willette-Brown, Jami \| Song, Na-Young \| Lomada, Dakshayani \| Song, Yongmei \| Xue, Liyan \| Gray, Zane \| Zhao, Zitong \| Davis, Sean R. \| Sun, Zhonghe \| ... \| Hu, Yinling Cell Host & Microbe, volume 21, issue 4, pages 478-493.e7 (2017). 10.1016/j.chom.2017.03.006 Cited by (48) \| Cite \| Source \| Open Access
GenomicDataCommons: a Bioconductor Interface to the NCI Genomic Data Commons (journal article) Morgan, Martin \| Davis, Sean bioRxiv (2017). 10.1101/117200 Cited by (5) \| Cite \| Source \| Open Access
On the Selective Packaging of Genomic RNA by HIV-1 (journal article) Comas-Garcia, Mauricio \| Davis, Sean \| Rein, Alan Viruses, volume 8, issue 9, pages 246- (2016). 10.3390/v8090246 Cited by (58) \| Cite \| Source \| Open Access
caOmicsV: an R package for visualizing multidimensional cancer genomic data (journal article) Zhang, Hongen \| Meltzer, Paul S. \| Davis, Sean R. BMC Bioinformatics, volume 17, issue 1 (2016). 10.1186/s12859-016-0989-6 Cited by (4) \| Cite \| Source \| Open Access
Whole Genome Sequencing of Newly Established Pancreatic Cancer Lines Identifies Novel Somatic Mutation (c.2587G>A) in Axon Guidance Receptor Plexin A1 as Enhancer of Proliferation and Invasion (journal article) Sorber, Rebecca \| Teper, Yaroslav \| Abisoye-Ogunniyan, Abisola \| Waterfall, Joshua J. \| Davis, Sean \| Killian, J. Keith \| Pineda, Marbin \| Ray, Satyajit \| McCord, Matt R. \| Pflicke, Holger \| ... \| Rudloff, Udo PLOS ONE, volume 11, issue 3, pages e0149833- (2016). 10.1371/journal.pone.0149833 Cited by (18) \| Cite \| Source \| Open Access
Inhibition of Survivin with YM155 Induces Durable Tumor Response in Anaplastic Thyroid Cancer (journal article) Mehta, Amit \| Zhang, Lisa \| Boufraqech, Myriem \| Liu-Chittenden, Yi \| Zhang, Yaqin \| Patel, Dhaval \| Davis, Sean \| Rosenberg, Avi \| Ylaya, Kris \| Aufforth, Rachel \| ... \| Kebebew, Electron Clinical Cancer Research, volume 21, issue 18, pages 4123-4132 (2015). 10.1158/1078-0432.CCR-14-3251 Cited by (28) \| Cite \| Source \| Open Access
Super-enhancers delineate disease-associated regulatory nodes in T cells (journal article) Vahedi, Golnaz \| Kanno, Yuka \| Furumoto, Yasuko \| Jiang, Kan \| Parker, Stephen C. J. \| Erdos, Michael R. \| Davis, Sean R. \| Roychoudhuri, Rahul \| Restifo, Nicholas P. \| Gadina, Massimo \| ... \| O’Shea, John J. Nature, volume 520, issue 7548, pages 558-562 (2015). 10.1038/nature14154 Cited by (298) \| Cite \| Source \| Open Access
Dual inhibition of HDAC and EGFR signaling with CUDC-101 induces potent suppression of tumor growth and metastasis in anaplastic thyroid cancer (journal article) Zhang, Lisa \| Zhang, Yaqin \| Mehta, Amit \| Boufraqech, Myriem \| Davis, Sean \| Wang, Jing \| Tian, Ze \| Yu, Zhiya \| Boxer, Matthew B. \| Kiefer, Jeffrey A. \| ... \| Kebebew, Electron Oncotarget, volume 6, issue 11 (2015). 10.18632/oncotarget.3268 Cited by (49) \| Cite \| Source \| Open Access
Integrated analysis of DNA methylation, immunohistochemistry and mRNA expression, data identifies a methylation expression index (MEI) robustly associated with survival of ER-positive breast cancer patients (journal article) Figueroa, Jonine D. \| Yang, Howard \| Garcia-Closas, Montserrat \| Davis, Sean \| Meltzer, Paul \| Lissowska, Jolanta \| Horne, Hisani N. \| Sherman, Mark E. \| Lee, Maxwell Breast Cancer Research and Treatment, volume 150, issue 2, pages 457-466 (2015). 10.1007/s10549-015-3314-6 Cited by (7) \| Cite \| Source \| Open Access
Characterization of Genomic Alterations in Radiation-Associated Breast Cancer among Childhood Cancer Survivors, Using Comparative Genomic Hybridization (CGH) Arrays (journal article) Yang, Xiaohong R. \| Killian, J. Keith \| Hammond, Sue \| Burke, Laura S. \| Bennett, Hunter \| Wang, Yonghong \| Davis, Sean R. \| Strong, Louise C. \| Neglia, Joseph \| Stovall, Marilyn \| ... \| Meltzer, Paul PLOS ONE, volume 10, issue 3, pages e0116078- (2015). 10.1371/journal.pone.0116078 Cited by (10) \| Cite \| Source \| Open Access
miR30a Inhibits LOX Expression and Anaplastic Thyroid Cancer Progression (journal article) Boufraqech, Myriem \| Nilubol, Naris \| Zhang, Lisa \| Gara, Sudheer Kumar \| Sadowski, Samira M. \| Mehta, Amit \| He, Mei \| Davis, Sean \| Dreiling, Jennifer \| Copland, John A. \| ... \| Kebebew, Electron Cancer Research, volume 75, issue 2, pages 367-377 (2015). 10.1158/0008-5472.CAN-14-2304 Cited by (60) \| Cite \| Source \| Open Access
The Bioconductor channel in F1000Research (journal article) Huber, Wolfgang \| Carey, Vincent J. \| Davis, Sean \| Hansen, Kasper Daniel \| Morgan, Martin F1000Research, volume 4 (2015). 10.12688/f1000research.6758.2 Cited by (4) \| Cite \| Source \| Open Access