Mohammad M. Karimi

ScholarGPS® ID: 34940835935994

Affiliation

Imperial College London, London, United Kingdom

Affiliation History

Field

Life Sciences

Discipline

Genetics

Top Specialties

DNA | Stem Cell | Epigenomics

Metrics Summary

Publication Count

Predicted Citations

3,343

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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ModEx: a general purpose computer model exploration system (journal article) Younesy, Hamid \| Pober, Joseph \| Möller, Torsten \| Karimi, Mohammad M. Frontiers in Bioinformatics, volume 3 (2023). 10.3389/fbinf.2023.1153800 Cite \| Source
Surveillance of cohesin-supported chromosome structure controls meiotic progression (journal article) Castellano-Pozo, Maikel \| Pacheco, Sarai \| Sioutas, Georgios \| Jaso-Tamame, Angel Luis \| Dore, Marian H. \| Karimi, Mohammad M. \| Martinez-Perez, Enrique Nature Communications, volume 11, issue 1 (2020). 10.1038/s41467-020-18219-9 Cited by (14) \| Cite \| Source
LIONS: analysis suite for detecting and quantifying transposable element initiated transcription from RNA-seq (journal article) Babaian, Artem \| Thompson, I Richard \| Lever, Jake \| Gagnier, Liane \| Karimi, Mohammad M \| Mager, Dixie L Bioinformatics, volume 35, issue 19, pages 3839-3841 (2019). 10.1093/bioinformatics/btz130 Cited by (20) \| Cite \| Source
Development and application of an integrated allele-specific pipeline for methylomic and epigenomic analysis (MEA) (journal article) Richard Albert, Julien \| Koike, Tasuku \| Younesy, Hamid \| Thompson, Richard \| Bogutz, Aaron B. \| Karimi, Mohammad M. \| Lorincz, Matthew C. BMC Genomics, volume 19, issue 1 (2018). 10.1186/s12864-018-4835-2 Cited by (10) \| Cite \| Source \| Open Access
LTR retrotransposons transcribed in oocytes drive species-specific and heritable changes in DNA methylation (journal article) Brind’Amour, Julie \| Kobayashi, Hisato \| Richard Albert, Julien \| Shirane, Kenjiro \| Sakashita, Akihiko \| Kamio, Asuka \| Bogutz, Aaron \| Koike, Tasuku \| Karimi, Mohammad M. \| Lefebvre, Louis \| ... \| Lorincz, Matthew C. Nature Communications, volume 9, issue 1 (2018). 10.1038/s41467-018-05841-x Cited by (56) \| Cite \| Source \| Open Access
Silencing of transposable elements may not be a major driver of regulatory evolution in primate iPSCs (journal article) Ward, Michelle C \| Zhao, Siming \| Luo, Kaixuan \| Pavlovic, Bryan J \| Karimi, Mohammad M \| Stephens, Matthew \| Gilad, Yoav eLife, volume 7 (2018). 10.7554/eLife.33084 Cited by (21) \| Cite \| Source \| Open Access
Inhibition of Methyltransferase Setd7 Allows the In Vitro Expansion of Myogenic Stem Cells with Improved Therapeutic Potential (journal article) Judson, Robert N. \| Quarta, Marco \| Oudhoff, Menno J. \| Soliman, Hesham \| Yi, Lin \| Chang, Chih Kai \| Loi, Gloria \| Vander Werff, Ryan \| Cait, Alissa \| Hamer, Mark \| ... \| Rossi, Fabio M. Cell Stem Cell, volume 22, issue 2, pages 177-190.e7 (2018). 10.1016/j.stem.2017.12.010 Cited by (50) \| Cite \| Source
H3S10ph broadly marks early-replicating domains in interphase ESCs and shows reciprocal antagonism with H3K9me2 (journal article) Chen, Carol C.L. \| Goyal, Preeti \| Karimi, Mohammad M. \| Abildgaard, Marie H. \| Kimura, Hiroshi \| Lorincz, Matthew C. Genome Research, volume 28, issue 1, pages 37-51 (2018). 10.1101/gr.224717.117 Cited by (36) \| Cite \| Source \| Open Access
On the role of H3.3 in retroviral silencing (journal article) Wolf, Gernot \| Rebollo, Rita \| Karimi, Mohammad M. \| Ewing, Adam D. \| Kamada, Rui \| Wu, Warren \| Wu, Brenda \| Bachu, Mahesh \| Ozato, Keiko \| Faulkner, Geoffrey J. \| ... \| Macfarlan, Todd S. Nature, volume 548, issue 7665, pages E1-E3 (2017). 10.1038/nature23277 Cited by (17) \| Cite \| Source
A novel isoform of IL-33 revealed by screening for transposable element promoted genes in human colorectal cancer (journal article) Lock, Frances E. \| Babaian, Artem \| Zhang, Ying \| Gagnier, Liane \| Kuah, Sabrina \| Weberling, Antonia \| Karimi, Mohammad M. \| Mager, Dixie L. PLOS ONE, volume 12, issue 7, pages e0180659- (2017). 10.1371/journal.pone.0180659 Cited by (17) \| Cite \| Source \| Open Access
ChAsE: chromatin analysis and exploration tool (journal article) Younesy, Hamid \| Nielsen, Cydney B. \| Lorincz, Matthew C. \| Jones, Steven J.M. \| Karimi, Mohammad M. \| Möller, Torsten Bioinformatics, volume 32, issue 21, pages 3324-3326 (2016). 10.1093/bioinformatics/btw382 Cited by (29) \| Cite \| Source \| Open Access
Activation of Endogenous Retroviruses in Dnmt1 −/− ESCs Involves Disruption of SETDB1-Mediated Repression by NP95 Binding to Hemimethylated DNA (journal article) Sharif, Jafar \| Endo, Takaho A. \| Nakayama, Manabu \| Karimi, Mohammad M. \| Shimada, Midori \| Katsuyama, Kayoko \| Goyal, Preeti \| Brind’Amour, Julie \| Sun, Ming-An \| Sun, Zhixiong \| ... \| Koseki, Haruhiko Cell Stem Cell, volume 19, issue 1, pages 81-94 (2016). 10.1016/j.stem.2016.03.013 Cited by (70) \| Cite \| Source \| Open Access
Onco-exaptation of an endogenous retroviral LTR drives IRF5 expression in Hodgkin lymphoma (journal article) Babaian, A \| Romanish, M T \| Gagnier, L \| Kuo, L Y \| Karimi, M M \| Steidl, C \| Mager, D L Oncogene, volume 35, issue 19, pages 2542-2546 (2016). 10.1038/onc.2015.308 Cited by (74) \| Cite \| Source
VisRseq: R-based visual framework for analysis of sequencing data (journal article) Younesy, Hamid \| Möller, Torsten \| Lorincz, Matthew C \| Karimi, Mohammad M \| Jones, Steven JM BMC Bioinformatics, volume 16, issue S11 (2015). 10.1186/1471-2105-16-S11-S2 Cited by (52) \| Cite \| Source \| Open Access
hnRNP K Coordinates Transcriptional Silencing by SETDB1 in Embryonic Stem Cells (journal article) Thompson, Peter J. \| Dulberg, Vered \| Moon, Kyung-Mee \| Foster, Leonard J. \| Chen, Carol \| Karimi, Mohammad M. \| Lorincz, Matthew C. PLOS Genetics, volume 11, issue 1, pages e1004933- (2015). 10.1371/journal.pgen.1004933 Cited by (56) \| Cite \| Source \| Open Access
An ultra-low-input native ChIP-seq protocol for genome-wide profiling of rare cell populations (journal article) Brind’Amour, Julie \| Liu, Sheng \| Hudson, Matthew \| Chen, Carol \| Karimi, Mohammad M. \| Lorincz, Matthew C. Nature Communications, volume 6, issue 1 (2015). 10.1038/ncomms7033 Cited by (274) \| Cite \| Source \| Open Access
Setdb1 is required for germline development and silencing of H3K9me3-marked endogenous retroviruses in primordial germ cells (journal article) Liu, Sheng \| Brind’Amour, Julie \| Karimi, Mohammad M. \| Shirane, Kenjiro \| Bogutz, Aaron \| Lefebvre, Louis \| Sasaki, Hiroyuki \| Shinkai, Yoichi \| Lorincz, Matthew C. Genes & Development, volume 28, issue 18, pages 2041-2055 (2014). 10.1101/gad.244848.114 Cited by (202) \| Cite \| Source \| Open Access
Distinct isoform of FABP7 revealed by screening for retroelement-activated genes in diffuse large B-cell lymphoma (journal article) Lock, Frances E. \| Rebollo, Rita \| Miceli-Royer, Katharine \| Gagnier, Liane \| Kuah, Sabrina \| Babaian, Artem \| Sistiaga-Poveda, Maialen \| Lai, C. Benjamin \| Nemirovsky, Oksana \| Serrano, Isabel \| ... \| Mager, Dixie L. Proceedings of the National Academy of Sciences, volume 111, issue 34 (2014). 10.1073/pnas.1405507111 Cited by (51) \| Cite \| Source \| Open Access
ALEA: a toolbox for allele-specific epigenomics analysis (journal article) Younesy, Hamid \| Möller, Torsten \| Heravi-Moussavi, Alireza \| Cheng, Jeffrey B. \| Costello, Joseph F. \| Lorincz, Matthew C. \| Karimi, Mohammad M. \| Jones, Steven J. M. Bioinformatics, volume 30, issue 8, pages 1172-1174 (2014). 10.1093/bioinformatics/btt744 Cited by (17) \| Cite \| Source \| Open Access
Distinct roles of KAP1, HP1 and G9a/GLP in silencing of the two-cell-specific retrotransposon MERVL in mouse ES cells (journal article) Maksakova, Irina A \| Thompson, Peter J \| Goyal, Preeti \| Jones, Steven JM \| Singh, Prim B \| Karimi, Mohammad M \| Lorincz, Matthew C Epigenetics & Chromatin, volume 6, issue 1 (2013). 10.1186/1756-8935-6-15 Cited by (137) \| Cite \| Source \| Open Access