Yang I. Li

ScholarGPS® ID: 32969473204575

Affiliation

University of Chicago, Chicago, United States

Affiliation History

Field

Life Sciences

Discipline

Genetics

Top Specialties

Gene Expression | Induced Pluripotent Stem Cell | RNA

Metrics Summary

Publication Count

Predicted Citations

2,116

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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Predicting RNA splicing from DNA sequence using Pangolin (journal article) Zeng, Tony \| Li, Yang I Genome Biology, volume 23, issue 1 (2022). 10.1186/s13059-022-02664-4 Cited by (37) \| Cite \| Source
Benchmarking sequencing methods and tools that facilitate the study of alternative polyadenylation (journal article) Shah, Ankeeta \| Mittleman, Briana E. \| Gilad, Yoav \| Li, Yang I. Genome Biology, volume 22, issue 1 (2021). 10.1186/s13059-021-02502-z Cited by (18) \| Cite \| Source
Comparison of semi-automated versus manual quantitative right ventricular assessment in tetralogy of Fallot (journal article) Lowisz, Joanna \| Alenghat, Francis J. \| Li, Yi \| Roberson, David \| Penk, Jamie \| Gandhi, Rupali Cardiology in the Young, volume 31, issue 11, pages 1781-1787 (2021). 10.1017/S1047951121000871 Cited by (1) \| Cite \| Source
The impact of cell type and context-dependent regulatory variants on human immune traits (journal article) Mu, Zepeng \| Wei, Wei \| Fair, Benjamin \| Miao, Jinlin \| Zhu, Ping \| Li, Yang I. Genome Biology, volume 22, issue 1 (2021). 10.1186/s13059-021-02334-x Cited by (28) \| Cite \| Source
Alignment of single-cell RNA-seq samples without overcorrection using kernel density matching (journal article) Chen, Mengjie \| Zhan, Qi \| Mu, Zepeng \| Wang, Lili \| Zheng, Zhaohui \| Miao, Jinlin \| Zhu, Ping \| Li, Yang I. Genome Research, volume 31, issue 4, pages 698-712 (2021). 10.1101/gr.261115.120 Cited by (4) \| Cite \| Source
LeafCutterMD: an algorithm for outlier splicing detection in rare diseases (journal article) Jenkinson, Garrett \| Li, Yang I \| Basu, Shubham \| Cousin, Margot A \| Oliver, Gavin R \| Klee, Eric W Bioinformatics, volume 36, issue 17, pages 4609-4615 (2020). 10.1093/bioinformatics/btaa259 Cited by (29) \| Cite \| Source
117-OR: Islet Cell Transplantation for Type 1 Diabetes: The UIC Experience, 2004-2020 (journal article) Danielson, Kirstie K. \| Monson, Rebecca S. \| LI, YI \| Oberholzer, Jose Diabetes, volume 69, issue Supplement_1 (2020). 10.2337/db20-117-OR Cited by (1) \| Cite \| Source
Imputation of single‐cell gene expression with an autoencoder neural network (journal article) Badsha, Md. Bahadur \| Li, Rui \| Liu, Boxiang \| Li, Yang I. \| Xian, Min \| Banovich, Nicholas E. \| Qiuyan Fu, Audrey Quantitative Biology, volume 8, issue 1, pages 78-94 (2020). 10.1007/s40484-019-0192-7 Cited by (28) \| Cite \| Source
Identification and Quantification of Splicing Quantitative Trait Loci (book chapter) In eQTL Analysis Shah, Ankeeta \| Li, Yang I. Springer US (2020) 10.1007/978-1-0716-0026-9_4 Cite \| Source
m6A mRNA Methylation Is Essential for Oligodendrocyte Maturation and CNS Myelination (journal article) Xu, Huan \| Dzhashiashvili, Yulia \| Shah, Ankeeta \| Kunjamma, Rejani B. \| Weng, Yi-lan \| Elbaz, Benayahu \| Fei, Qili \| Jones, Joshua S. \| Li, Yang I. \| Zhuang, Xiaoxi \| ... \| Popko, Brian Neuron, volume 105, issue 2, pages 293-309.e5 (2020). 10.1016/j.neuron.2019.12.013 Cited by (95) \| Cite \| Source
Trans Effects on Gene Expression Can Drive Omnigenic Inheritance (journal article) Liu, Xuanyao \| Li, Yang I. \| Pritchard, Jonathan K. Cell, volume 177, issue 4, pages 1022-1034.e6 (2019). 10.1016/j.cell.2019.04.014 Cited by (258) \| Cite \| Source
Discovery and characterization of variance QTLs in human induced pluripotent stem cells (journal article) Sarkar, Abhishek K. \| Tung, Po-Yuan \| Blischak, John D. \| Burnett, Jonathan E. \| Li, Yang I. \| Stephens, Matthew \| Gilad, Yoav PLOS Genetics, volume 15, issue 4, pages e1008045- (2019). 10.1371/journal.pgen.1008045 Cited by (40) \| Cite \| Source
Prioritizing Parkinson’s disease genes using population-scale transcriptomic data (journal article) Li, Yang I. \| Wong, Garrett \| Humphrey, Jack \| Raj, Towfique Nature Communications, volume 10, issue 1 (2019). 10.1038/s41467-019-08912-9 Cited by (98) \| Cite \| Source
Characterizing the Major Structural Variant Alleles of the Human Genome (journal article) Audano, Peter A. \| Sulovari, Arvis \| Graves-Lindsay, Tina A. \| Cantsilieris, Stuart \| Sorensen, Melanie \| Welch, AnneMarie E. \| Dougherty, Max L. \| Nelson, Bradley J. \| Shah, Ankeeta \| Dutcher, Susan K. \| ... \| Eichler, Evan E. Cell, volume 176, issue 3, pages 663-675.e19 (2019). 10.1016/j.cell.2018.12.019 Cited by (287) \| Cite \| Source
Integrative transcriptome analyses of the aging brain implicate altered splicing in Alzheimer’s disease susceptibility (journal article) Raj, Towfique \| Li, Yang I. \| Wong, Garrett \| Humphrey, Jack \| Wang, Minghui \| Ramdhani, Satesh \| Wang, Ying-Chih \| Ng, Bernard \| Gupta, Ishaan \| Haroutunian, Vahram \| ... \| De Jager, Philip L. Nature Genetics, volume 50, issue 11, pages 1584-1592 (2018). 10.1038/s41588-018-0238-1 Cited by (231) \| Cite \| Source
Trans effects on gene expression can drive omnigenic inheritance (journal article) Liu, Xuanyao \| Li, Yang I. \| Pritchard, Jonathan K bioRxiv (2018). 10.1101/425108 Cited by (12) \| Cite \| Source
Discovery and characterization of variance QTLs in human induced pluripotent stem cells (journal article) Sarkar, Abhishek \| Tung, Po-Yuan \| Blischak, John \| Burnett, Jonathan E. \| Li, Yang I. \| Stephens, Matthew \| Gilad, Yoav bioRxiv (2018). 10.1101/424192 Cited by (1) \| Cite \| Source
Annotation-free quantification of RNA splicing using LeafCutter (journal article) Li, Yang I. \| Knowles, David A. \| Humphrey, Jack \| Barbeira, Alvaro N. \| Dickinson, Scott P. \| Im, Hae Kyung \| Pritchard, Jonathan K. Nature Genetics, volume 50, issue 1, pages 151-158 (2018). 10.1038/s41588-017-0004-9 Cited by (369) \| Cite \| Source
Prioritizing Parkinson's Disease genes using population-scale transcriptomic data (journal article) Li, Yang I. \| Wong, Garrett \| Humphrey, Jack \| Raj, Towfique bioRxiv (2017). 10.1101/231001 Cited by (1) \| Cite \| Source \| Open Access
Synthetic Corticosteroids (book chapter) In Neuroimaging Pharmacopoeia Johnson, Jason M. \| Li, Yi \| Ginat, Daniel Thomas Springer International Publishing (2015) 10.1007/978-3-319-12715-6_46 Cite \| Source