Alexander E. Urban

ScholarGPS® ID: 29889824138954

Affiliation

Stanford University, Stanford, United States

Affiliation History

Field

Life Sciences

Discipline

Genetics

Top Specialties

Metrics Summary

Publication Count

Predicted Citations

10,344

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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Synaptic pruning in schizophrenia is not classical (journal article) Kalinowski, Agnieszka \| Urban, Alexander E. Brain, Behavior, and Immunity, volume 120 (2024). 10.1016/j.bbi.2024.05.033 Cite \| Source
Mutations in human DNA methyltransferase DNMT1 induce specific genome-wide epigenomic and transcriptomic changes in neurodevelopment (journal article) Davis, Kasey N \| Qu, Ping-Ping \| Ma, Shining \| Lin, Ling \| Plastini, Melanie \| Dahl, Niklas \| Plazzi, Giuseppe \| Pizza, Fabio \| O’Hara, Ruth \| Wong, Wing Hung \| ... \| Urban, Alexander E Human Molecular Genetics, volume 32, issue 21, pages 3105-3120 (2023). 10.1093/hmg/ddad123 Cited by (2) \| Cite \| Source
SOMATIC MOSAICISM IN THE HUMAN BRAIN: IMPLICATIONS FOR BRAIN FUNCTION AND NEUROPSYCHIATRIC DISORDERS (journal article) Urban, Alexander \| Abyzov, Alexej \| Pinto, Dalila European Neuropsychopharmacology, volume 75 (2023). 10.1016/j.euroneuro.2023.08.071 Cite \| Source
T18. DETECTION OF COMPLEX STRUCTURAL GENOME VARIANTS USING ARC-SV AND THEIR ENRICHMENT INSIDE GENES OF NEURODEVELOPMENTAL PATHWAYS (journal article) Hughes, Christopher \| Zhou, Bo \| Arthur, Joseph G. \| Kim, Taeyoung \| Song, Giltae \| Palejev, Dean \| Wong, Wing H. \| Urban, Alexander E. European Neuropsychopharmacology, volume 63 (2022). 10.1016/j.euroneuro.2022.07.322 Cite \| Source
81. RESOLVING THE EXACT BREAKPOINTS AND SEQUENCE REARRANGEMENTS OF LARGE NEUROPSYCHIATRIC COPY NUMBER VARIATIONS (CNVS) AT SINGLE BASE-PAIR RESOLUTION USING CRISPR-TARGETED ULTRA-LONG READ SEQUENCING (CTLR-SEQ) (journal article) Zhou, Bo \| Shin, GiWon \| Vervoort, Lisanne \| Greer, Stephanie \| Huang, Yiling \| Roychowdhury, Tanmoy \| Pattni, Reenal \| Abyzov, Alexej \| Vermeesch, Joris \| Ji, Hanlee \| Urban, Alexander European Neuropsychopharmacology, volume 63 (2022). 10.1016/j.euroneuro.2022.07.166 Cite \| Source
Maternal attachment insecurity, maltreatment history, and depressive symptoms are associated with broad DNA methylation signatures in infants (journal article) Robakis, Thalia K. \| Roth, Marissa C. \| King, Lucy S. \| Humphreys, Kathryn L. \| Ho, Marcus \| Zhang, Xianglong \| Chen, Yuhao \| Li, Tongbin \| Rasgon, Natalie L. \| Watson, Kathleen T. \| ... \| Gotlib, Ian H. Molecular Psychiatry, volume 27, issue 8, pages 3306-3315 (2022). 10.1038/s41380-022-01592-w Cited by (8) \| Cite \| Source
Hyperexcitable arousal circuits drive sleep instability during aging (journal article) Li, Shi-Bin \| Damonte, Valentina Martinez \| Chen, Chong \| Wang, Gordon X. \| Kebschull, Justus M. \| Yamaguchi, Hiroshi \| Bian, Wen-Jie \| Purmann, Carolin \| Pattni, Reenal \| Urban, Alexander Eckehart \| ... \| de Lecea, Luis Science, volume 375, issue 6583 (2022). 10.1126/science.abh3021 Cited by (77) \| Cite \| Source
Increased activation product of Complement 4 protein in plasma of individuals with schizophrenia (journal article) Kalinowski, A. \| Liliental, J. \| Anker, L. \| Linkovski, O. \| Culbertson, C. \| Hall, J. \| Pattni, R. \| Sabatti, C. \| Noordsy, D. \| Hallmayer, J.F. \| ... \| Urban, A.E. Brain, Behavior, and Immunity, volume 98 (2021). 10.1016/j.bbi.2021.08.091 Cite \| Source
Increased activation product of complement 4 protein in plasma of individuals with schizophrenia (journal article) Kalinowski, Agnieszka \| Liliental, Joanna \| Anker, Lauren A. \| Linkovski, Omer \| Culbertson, Collin \| Hall, Jacob N. \| Pattni, Reenal \| Sabatti, Chiara \| Noordsy, Douglas \| Hallmayer, Joachim F. \| ... \| Urban, Alexander E. Translational Psychiatry, volume 11, issue 1 (2021). 10.1038/s41398-021-01583-5 Cited by (11) \| Cite \| Source
PRG2 and AQPEP are misexpressed in fetal membranes in placenta previa and percreta † (journal article) Zhang, Elisa T \| Hannibal, Roberta L \| Badillo Rivera, Keyla M \| Song, Janet H T \| McGowan, Kelly \| Zhu, Xiaowei \| Meinhardt, Gudrun \| Knöfler, Martin \| Pollheimer, Jürgen \| Urban, Alexander E \| ... \| Baker, Julie C Biology of Reproduction, volume 105, issue 1, pages 244-257 (2021). 10.1093/biolre/ioab068 Cited by (4) \| Cite \| Source
Network Effects of the 15q13.3 Microdeletion on the Transcriptome and Epigenome in Human-Induced Neurons (journal article) Zhang, Siming \| Zhang, Xianglong \| Purmann, Carolin \| Ma, Shining \| Shrestha, Anima \| Davis, Kasey N. \| Ho, Marcus \| Huang, Yiling \| Pattni, Reenal \| Wong, Wing Hung \| ... \| Urban, Alexander E. Biological Psychiatry, volume 89, issue 5, pages 497-509 (2021). 10.1016/j.biopsych.2020.06.021 Cited by (13) \| Cite \| Source
Machine learning reveals bilateral distribution of somatic L1 insertions in human neurons and glia (journal article) Zhu, Xiaowei \| Zhou, Bo \| Pattni, Reenal \| Gleason, Kelly \| Tan, Chunfeng \| Kalinowski, Agnieszka \| Sloan, Steven \| Fiston-Lavier, Anna-Sophie \| Mariani, Jessica \| Petrov, Dmitri \| ... \| Straub, Ri Nature Neuroscience, volume 24, issue 2, pages 186-196 (2021). 10.1038/s41593-020-00767-4 Cited by (17) \| Cite \| Source
“…This Has to Do With My Identity. And I Don't Want to Make it Totally Transparent.” Identity Relevance in the Attitudes of Affected People and Laypersons to the Handling of High-Throughput Genomic Data (journal article) Urban, Alexander Frontiers in Sociology, volume 5 (2020). 10.3389/fsoc.2020.532357 Cited by (1) \| Cite \| Source
Complex mosaic structural variations in human fetal brains (journal article) Sekar, Shobana \| Tomasini, Livia \| Proukakis, Christos \| Bae, Taejeong \| Manlove, Logan \| Jang, Yeongjun \| Scuderi, Soraya \| Zhou, Bo \| Kalyva, Maria \| Amiri, Anahita \| ... \| Abyzov, Alexej Genome Research, volume 30, issue 12, pages 1695-1704 (2020). 10.1101/gr.262667.120 Cited by (14) \| Cite \| Source
CNN-Peaks: ChIP-Seq peak detection pipeline using convolutional neural networks that imitate human visual inspection (journal article) Oh, Dongpin \| Strattan, J. Seth \| Hur, Junho K. \| Bento, José \| Urban, Alexander Eckehart \| Song, Giltae \| Cherry, J. Michael Scientific Reports, volume 10, issue 1 (2020). 10.1038/s41598-020-64655-4 Cited by (12) \| Cite \| Source
Integrated functional genomic analyses of Klinefelter and Turner syndromes reveal global network effects of altered X chromosome dosage (journal article) Zhang, Xianglong \| Hong, David \| Ma, Shining \| Ward, Thomas \| Ho, Marcus \| Pattni, Reenal \| Duren, Zhana \| Stankov, Atanas \| Bade Shrestha, Sharon \| Hallmayer, Joachim \| ... \| Urban, Alexander E. Proceedings of the National Academy of Sciences, volume 117, issue 9, pages 4864-4873 (2020). 10.1073/pnas.1910003117 Cited by (58) \| Cite \| Source
Structural variation in the sequencing era (journal article) Ho, Steve S. \| Urban, Alexander E. \| Mills, Ryan E. Nature Reviews Genetics, volume 21, issue 3, pages 171-189 (2020). 10.1038/s41576-019-0180-9 Cited by (295) \| Cite \| Source
Epigenetic signatures of attachment insecurity and childhood adversity provide evidence for role transition in the pathogenesis of perinatal depression (journal article) Robakis, Thalia K. \| Zhang, Siming \| Rasgon, Natalie L. \| Li, Tongbin \| Wang, Tao \| Roth, Marissa C. \| Humphreys, Kathryn L. \| Gotlib, Ian H. \| Ho, Marcus \| Khechaduri, Arineh \| ... \| Urban, Alexander E. Translational Psychiatry, volume 10, issue 1 (2020). 10.1038/s41398-020-0703-3 Cited by (27) \| Cite \| Source
Clinical application of genomic high-throughput data: Infrastructural, ethical, legal and psychosocial aspects (journal article) Umbach, Nadine \| Beißbarth, Tim \| Bleckmann, Annalen \| Duttge, Gunnar \| Flatau, Laura \| König, Alexander \| Kuhn, Jessica \| Perera-Bel, Julia \| Roschauer, Julia \| Schulze, Thomas G. \| ... \| Sax, Ulrich European Neuropsychopharmacology, volume 31 (2020). 10.1016/j.euroneuro.2019.09.008 Cited by (4) \| Cite \| Source
Metabolism of cholesterol and progesterone is differentially regulated in primary trophoblastic subtypes and might be disturbed in recurrent miscarriages (journal article) Vondra, Sigrid \| Kunihs, Victoria \| Eberhart, Tana \| Eigner, Karin \| Bauer, Raimund \| Haslinger, Peter \| Haider, Sandra \| Windsperger, Karin \| Klambauer, Günter \| Schütz, Birgit \| ... \| Röhrl, Clemens Journal of Lipid Research, volume 60, issue 11, pages 1922-1934 (2019). 10.1194/jlr.P093427 Cited by (25) \| Cite \| Source

Title	Investigators	Year	Cost	Agency
Integrated, cell type specific functional genomics analyses of regulatory sequence elements and their dynamic interaction networks in neuropsychiatric brain tissues	Hallmayer, Joachim F \| Snyder, Michael P. \| Urban, Alexander Eckehart	2020	$1,643,250	NATIONAL INSTITUTE OF MENTAL HEALTH
Integrated, cell type specific functional genomics analyses of regulatory sequence elements and their dynamic interaction networks in neuropsychiatric brain tissues	Hallmayer, Joachim F \| Snyder, Michael P. \| Urban, Alexander Eckehart	2019	$1,643,250	NATIONAL INSTITUTE OF MENTAL HEALTH
Project 4	Urban, Alexander Eckehart	2018	$278,248	NATIONAL HUMAN GENOME RESEARCH INSTITUTE
Project 4	Urban, Alexander Eckehart	2017	$288,344	NATIONAL HUMAN GENOME RESEARCH INSTITUTE
Project 4	Urban, Alexander Eckehart	2016	$298,656	NATIONAL HUMAN GENOME RESEARCH INSTITUTE
Project 4	Urban, Alexander Eckehart	2015	$325,852	NATIONAL HUMAN GENOME RESEARCH INSTITUTE
Project 4	Urban, Alexander Eckehart	2014	$293,021	NATIONAL HUMAN GENOME RESEARCH INSTITUTE
Genomic and epigenomic effects of large CNV in neurons from iPSC	Urban, Alexander Eckehart	2012	$2,355,000	NATIONAL INSTITUTE OF MENTAL HEALTH