Christian Rinke

ScholarGPS® ID: 28623340949416

Affiliation

University of Queensland, Brisbane, Queensland, Australia, Australia

Affiliation History

Field

Life Sciences

Discipline

Biology and Biological Sciences

Top Specialties

Genomics | Bacteria | Phylogenetic Tree | Symbiosis | Dark Matter

Metrics Summary

Publication Count

Predicted Citations

11,950

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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Putative genome contamination has minimal impact on the GTDB taxonomy (journal article) Mussig, Aaron J. \| Chaumeil, Pierre-Alain \| Chuvochina, Maria \| Rinke, Christian \| Parks, Donovan H. \| Hugenholtz, Philip Microbial Genomics , volume 10, issue 5 (2024). 10.1099/mgen.0.001256 Cite \| Source
Gene inversion led to the emergence of brackish archaeal heterotrophs in the aftermath of the Cryogenian Snowball Earth (journal article) Fan, Lu \| Xu, Bu \| Chen, Songze \| Liu, Yang \| Li, Fuyan \| Xie, Wei \| Prabhu, Apoorva \| Zou, Dayu \| Wan, Ru \| Li, Hongliang \| ... \| Zhang, Chuanlun PNAS Nexus, volume 3, issue 2 (2024). 10.1093/pnasnexus/pgae057 Cite \| Source
Machine learning and metagenomics identifies uncharacterized taxa inferred to drive biogeochemical cycles in a subtropical hypereutrophic estuary (journal article) Prabhu, Apoorva \| Tule, Sanjana \| Chuvochina, Maria \| Bodén, Mikael \| McIlroy, Simon J \| Zaugg, Julian \| Rinke, Christian ISME Communications, volume 4, issue 1 (2024). 10.1093/ismeco/ycae067 Cite \| Source
Protecting the invisible: Establishing guideline values for copper toxicity to marine microbiomes (journal article) Thomas, Marie C. \| Waugh, Gretel \| Vanwonterghem, Inka \| Webster, Nicole S. \| Rinke, Christian \| Fisher, Rebecca \| Luter, Heidi M. \| Negri, Andrew P. Science of The Total Environment, volume 904 (2023). 10.1016/j.scitotenv.2023.166658 Cite \| Source
Proposal of names for 329 higher rank taxa defined in the Genome Taxonomy Database under two prokaryotic codes (journal article) Chuvochina, Maria \| Mussig, Aaron J \| Chaumeil, Pierre-Alain \| Skarshewski, Adam \| Rinke, Christian \| Parks, Donovan H \| Hugenholtz, Philip FEMS Microbiology Letters, volume 370 (2023). 10.1093/femsle/fnad071 Cited by (10) \| Cite \| Source
Insights into plastic biodegradation: community composition and functional capabilities of the superworm (Zophobas morio) microbiome in styrofoam feeding trials (journal article) Sun, Jiarui \| Prabhu, Apoorva \| Aroney, Samuel T. N. \| Rinke, Christian Microbial Genomics , volume 8, issue 6 (2022). 10.1099/mgen.0.000842 Cited by (17) \| Cite \| Source
Three families of Asgard archaeal viruses identified in metagenome-assembled genomes (journal article) Medvedeva, Sofia \| Sun, Jiarui \| Yutin, Natalya \| Koonin, Eugene V. \| Nunoura, Takuro \| Rinke, Christian \| Krupovic, Mart Nature Microbiology, volume 7, issue 7, pages 962-973 (2022). 10.1038/s41564-022-01144-6 Cited by (19) \| Cite \| Source
Chemotaxis shapes the microscale organization of the ocean’s microbiome (journal article) Raina, Jean-Baptiste \| Lambert, Bennett S. \| Parks, Donovan H. \| Rinke, Christian \| Siboni, Nachshon \| Bramucci, Anna \| Ostrowski, Martin \| Signal, Brandon \| Lutz, Adrian \| Mendis, Himasha \| ... \| Seymour, Justin R. Nature, volume 605, issue 7908, pages 132-138 (2022). 10.1038/s41586-022-04614-3 Cited by (50) \| Cite \| Source
GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy (journal article) Parks, Donovan H \| Chuvochina, Maria \| Rinke, Christian \| Mussig, Aaron J \| Chaumeil, Pierre-Alain \| Hugenholtz, Philip Nucleic Acids Research, volume 50, issue D1, pages D785-D794 (2022). 10.1093/nar/gkab776 Cited by (623) \| Cite \| Source
Recoding of stop codons expands the metabolic potential of two novel Asgardarchaeota lineages (journal article) Sun, Jiarui \| Evans, Paul N \| Gagen, Emma J \| Woodcroft, Ben J \| Hedlund, Brian P \| Woyke, Tanja \| Hugenholtz, Philip \| Rinke, Christian ISME Communications, volume 1, issue 1 (2021). 10.1038/s43705-021-00032-0 Cited by (22) \| Cite \| Source
Microvolume DNA extraction methods for microscale amplicon and metagenomic studies (journal article) Bramucci, Anna R \| Focardi, Amaranta \| Rinke, Christian \| Hugenholtz, Philip \| Tyson, Gene W \| Seymour, Justin R \| Raina, Jean-Baptiste ISME Communications, volume 1, issue 1 (2021). 10.1038/s43705-021-00079-z Cited by (12) \| Cite \| Source
A standardized archaeal taxonomy for the Genome Taxonomy Database (journal article) Rinke, Christian \| Chuvochina, Maria \| Mussig, Aaron J. \| Chaumeil, Pierre-Alain \| Davín, Adrián A. \| Waite, David W. \| Whitman, William B. \| Parks, Donovan H. \| Hugenholtz, Philip Nature Microbiology, volume 6, issue 7, pages 946-959 (2021). 10.1038/s41564-021-00918-8 Cited by (183) \| Cite \| Source
A complete domain-to-species taxonomy for Bacteria and Archaea (journal article) Parks, Donovan H. \| Chuvochina, Maria \| Chaumeil, Pierre-Alain \| Rinke, Christian \| Mussig, Aaron J. \| Hugenholtz, Philip Nature Biotechnology, volume 38, issue 9, pages 1079-1086 (2020). 10.1038/s41587-020-0501-8 Cited by (714) \| Cite \| Source
Undinarchaeota illuminate DPANN phylogeny and the impact of gene transfer on archaeal evolution (journal article) Dombrowski, Nina \| Williams, Tom A. \| Sun, Jiarui \| Woodcroft, Benjamin J. \| Lee, Jun-Hoe \| Minh, Bui Quang \| Rinke, Christian \| Spang, Anja Nature Communications, volume 11, issue 1 (2020). 10.1038/s41467-020-17408-w Cited by (61) \| Cite \| Source
Defining the human gut host–phage network through single-cell viral tagging (journal article) Džunková, Mária \| Low, Soo Jen \| Daly, Joshua N. \| Deng, Li \| Rinke, Christian \| Hugenholtz, Philip Nature Microbiology, volume 4, issue 12, pages 2192-2203 (2019). 10.1038/s41564-019-0526-2 Cited by (82) \| Cite \| Source
A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea ( Ca . Poseidoniales ord. nov.) (journal article) Rinke, Christian \| Rubino, Francesco \| Messer, Lauren F \| Youssef, Noha \| Parks, Donovan H \| Chuvochina, Maria \| Brown, Mark \| Jeffries, Thomas \| Tyson, Gene W \| Seymour, Justin R \| Hugenholtz, Philip The ISME Journal, volume 13, issue 3, pages 663-675 (2019). 10.1038/s41396-018-0282-y Cited by (115) \| Cite \| Source
The importance of designating type material for uncultured taxa (journal article) Chuvochina, Maria \| Rinke, Christian \| Parks, Donovan H. \| Rappé, Michael S. \| Tyson, Gene W. \| Yilmaz, Pelin \| Whitman, William B. \| Hugenholtz, Philip Systematic and Applied Microbiology, volume 42, issue 1, pages 15-21 (2019). 10.1016/j.syapm.2018.07.003 Cited by (71) \| Cite \| Source
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life (journal article) Parks, Donovan H \| Chuvochina, Maria \| Waite, David W \| Rinke, Christian \| Skarshewski, Adam \| Chaumeil, Pierre-Alain \| Hugenholtz, Philip Nature Biotechnology, volume 36, issue 10, pages 996-1004 (2018). 10.1038/nbt.4229 Cited by (2,053) \| Cite \| Source
Addendum: Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.) (journal article) Waite, David W. \| Vanwonterghem, Inka \| Rinke, Christian \| Parks, Donovan H. \| Zhang, Ying \| Takai, Ken \| Sievert, Stefan M. \| Simon, Jörg \| Campbell, Barbara J. \| Hanson, Thomas E. \| ... \| Hugenholtz, Philip Frontiers in Microbiology, volume 9 (2018). 10.3389/fmicb.2018.00772 Cited by (70) \| Cite \| Source \| Open Access
A proposal for a standardized bacterial taxonomy based on genome phylogeny (journal article) Parks, Donovan H. \| Chuvochina, Maria \| Waite, David W. \| Rinke, Christian \| Skarshewski, Adam \| Chaumeil, Pierre-Alain \| Hugenholtz, Philip bioRxiv (2018). 10.1101/256800 Cited by (42) \| Cite \| Source \| Open Access