Matthew J. Rossi

ScholarGPS® ID: 23448384986259

Affiliation
Pennsylvania State University, University Park, United States
Affiliation History

Field
Life Sciences
Discipline
Biochemistry
Top Specialties
DNA | Mobilities | Nucleic Acid
Metrics Summary
Publication Count
21
Predicted Citations
882
Predicted h-index
16
Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

  • Publications
  • Books
  • Patents
  • NIH/NSF
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Genome-wide promoter assembly in E. coli measured at single-base resolution (journal article)
John, Jordan | Jabbar, Javaid | Badjatia, Nitika | Rossi, Matthew J. | Lai, William K.M. | Pugh, B. Franklin
Genome Research (2022).
10.1101/gr.276544.121
Cite | Source
A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells (journal article)
Lai, William K.M. | Mariani, Luca | Rothschild, Gerson | Smith, Edwin R. | Venters, Bryan J. | Blanda, Thomas R. | Kuntala, Prashant K. | Bocklund, Kylie | Mairose, Joshua | Dweikat, Sarah N. | ... | Pugh, B. Franklin
Genome Research, volume 31, issue 9, pages 1663-1679 (2021).
10.1101/gr.275472.121
Cited by (7) | Cite | Source
A high-resolution protein architecture of the budding yeast genome (journal article)
Rossi, Matthew J. | Kuntala, Prashant K. | Lai, William K. M. | Yamada, Naomi | Badjatia, Nitika | Mittal, Chitvan | Kuzu, Guray | Bocklund, Kylie | Farrell, Nina P. | Blanda, Thomas R. | ... | Pugh, B. Franklin
Nature, volume 592, issue 7853, pages 309-314 (2021).
10.1038/s41586-021-03314-8
Cited by (100) | Cite | Source
Alignment and quantification of ChIP-exo crosslinking patterns reveal the spatial organization of protein–DNA complexes (journal article)
Yamada, Naomi | Rossi, Matthew J | Farrell, Nina | Pugh, B Franklin | Mahony, Shaun
Nucleic Acids Research, volume 48, issue 20, pages 11215-11226 (2020).
10.1093/nar/gkaa618
Cited by (1) | Cite | Source
Simplified ChIP-exo assays (journal article)
Rossi, Matthew J. | Lai, William K. M. | Pugh, B. Franklin
Nature Communications, volume 9, issue 1 (2018).
10.1038/s41467-018-05265-7
Cited by (53) | Cite | Source | Open Access
Genome-wide determinants of sequence-specific DNA binding of general regulatory factors (journal article)
Rossi, Matthew J. | Lai, William K.M. | Pugh, B. Franklin
Genome Research, volume 28, issue 4, pages 497-508 (2018).
10.1101/gr.229518.117
Cited by (31) | Cite | Source | Open Access
Widespread and precise reprogramming of yeast protein–genome interactions in response to heat shock (journal article)
Vinayachandran, Vinesh | Reja, Rohit | Rossi, Matthew J. | Park, Bongsoo | Rieber, Lila | Mittal, Chitvan | Mahony, Shaun | Pugh, B. Franklin
Genome Research, volume 28, issue 3, pages 357-366 (2018).
10.1101/gr.226761.117
Cited by (50) | Cite | Source | Open Access
RAD54 N-terminal domain is a DNA sensor that couples ATP hydrolysis with branch migration of Holliday junctions (journal article)
Goyal, Nadish | Rossi, Matthew J. | Mazina, Olga M. | Chi, Yong | Moritz, Robert L. | Clurman, Bruce E. | Mazin, Alexander V.
Nature Communications, volume 9, issue 1 (2018).
10.1038/s41467-017-02497-x
Cited by (22) | Cite | Source | Open Access
Correspondence: DNA shape is insufficient to explain binding (journal article)
Rossi, Matthew J. | Lai, William K.M. | Pugh, B. Franklin
Nature Communications, volume 8, issue 1 (2017).
10.1038/ncomms15643
Cited by (6) | Cite | Source | Open Access
Polarity and Bypass of DNA Heterology during Branch Migration of Holliday Junctions by Human RAD54, BLM, and RECQ1 Proteins (journal article)
Mazina, Olga M. | Rossi, Matthew J. | Deakyne, Julianna S. | Huang, Fei | Mazin, Alexander V.
Journal of Biological Chemistry, volume 287, issue 15, pages 11820-11832 (2012).
10.1074/jbc.M112.341347
Cited by (27) | Cite | Source | Open Access
Origin of the Redox-Induced Conductance Transition in a Thin Film of Switchable Rotaxanes (journal article)
Rossi, Matthew | Sohlberg, Karl
Journal of Computational and Theoretical Nanoscience, volume 8, issue 9, pages 1895-1899 (2011).
10.1166/jctn.2011.1867
Cited by (4) | Cite | Source
The RecA/RAD51 protein drives migration of Holliday junctions via polymerization on DNA (journal article)
Rossi, Matthew J. | Mazina, Olga M. | Bugreev, Dmitry V. | Mazin, Alexander V.
Proceedings of the National Academy of Sciences, volume 108, issue 16, pages 6432-6437 (2011).
10.1073/pnas.1016072108
Cited by (17) | Cite | Source | Open Access
Cooperation of RAD51 and RAD54 in regression of a model replication fork (journal article)
Bugreev, Dmitry V. | Rossi, Matthew J. | Mazin, Alexander V.
Nucleic Acids Research, volume 39, issue 6, pages 2153-2164 (2011).
10.1093/nar/gkq1139
Cited by (71) | Cite | Source | Open Access
Reconstituting the Key Steps of the DNA Double-Strand Break Repair In Vitro (book chapter)
In DNA Recombination
Rossi, Matthew J. | Bugreev, Dmitry V. | Mazina, Olga M. | Mazin, Alexander V.
Humana Press (2011)
10.1007/978-1-61779-129-1_23
Cited by (1) | Cite | Source
Hole Mobility for Thin-Film Organic Molecular Solids in the Presence of Defects or Surface Adsorbates: Theory and Implications for Gas Detection (journal article)
Rossi, Matthew | Sohlberg, Karl
The Journal of Physical Chemistry C, volume 114, issue 28, pages 12173-12189 (2010).
10.1021/jp100201q
Cited by (9) | Cite | Source
Analyzing the branch migration activities of eukaryotic proteins (journal article)
Rossi, Matthew J. | Mazina, Olga M. | Bugreev, Dmitry V. | Mazin, Alexander V.
Methods, volume 51, issue 3, pages 336-346 (2010).
10.1016/j.ymeth.2010.02.010
Cited by (16) | Cite | Source | Open Access
Rad54, the motor of homologous recombination (journal article)
Mazin, Alexander V. | Mazina, Olga M. | Bugreev, Dmitry V. | Rossi, Matthew J.
DNA Repair, volume 9, issue 3, pages 286-302 (2010).
10.1016/j.dnarep.2009.12.006
Cited by (140) | Cite | Source | Open Access
Predictions of Hole Mobility in Molecular Organic Crystals: Incorporating Thermal Effects (journal article)
Rossi, Matthew | Sohlberg, Karl
The Journal of Physical Chemistry C, volume 113, issue 16, pages 6821-6831 (2009).
10.1021/jp8086978
Cited by (19) | Cite | Source
Rad51 Protein Stimulates the Branch Migration Activity of Rad54 Protein (journal article)
Rossi, Matthew J. | Mazin, Alexander V.
Journal of Biological Chemistry, volume 283, issue 36, pages 24698-24706 (2008).
10.1074/jbc.M800839200
Cited by (22) | Cite | Source | Open Access
Interactions of Human Rad54 Protein with Branched DNA Molecules (journal article)
Mazina, Olga M. | Rossi, Matthew J. | Thomaaö, Nicolas H. | Mazin, Alexander V.
Journal of Biological Chemistry, volume 282, issue 29, pages 21068-21080 (2007).
10.1074/jbc.M701992200
Cited by (30) | Cite | Source | Open Access