Peyton Greenside

ScholarGPS® ID: 18014029781334

Affiliation

Stanford University, Stanford, United States

Affiliation History

Field

Life Sciences

Discipline

Genetics

Top Specialties

DNA | Artificial Neural Network

Metrics Summary

Publication Count

Predicted Citations

4,657

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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Landscape of cohesin-mediated chromatin loops in the human genome (journal article) Grubert, Fabian \| Srivas, Rohith \| Spacek, Damek V \| Kasowski, Maya \| Ruiz-Velasco, Mariana \| Sinnott-Armstrong, Nasa \| Greenside, Peyton \| Narasimha, Anil \| Liu, Qing \| Geller, Benjamin \| ... \| Snyder, Michael Nature, volume 583, issue 7818, pages 737-743 (2020). 10.1038/s41586-020-2151-x Cited by (104) \| Cite \| Source
Mitigation of off-target toxicity in CRISPR-Cas9 screens for essential non-coding elements (journal article) Tycko, Josh \| Wainberg, Michael \| Marinov, Georgi K. \| Ursu, Oana \| Hess, Gaelen T. \| Ego, Braeden K. \| Li, Amy \| Truong, Alisa \| Trevino, Alexandro E. \| Spees, Kaitlyn \| ... \| Bassik, Michael C. Nature Communications, volume 10, issue 1 (2019). 10.1038/s41467-019-11955-7 Cited by (88) \| Cite \| Source
Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively parallel reporter assays (journal article) Movva, Rajiv \| Greenside, Peyton \| Marinov, Georgi K. \| Nair, Surag \| Shrikumar, Avanti \| Kundaje, Anshul PLOS ONE, volume 14, issue 6, pages e0218073- (2019). 10.1371/journal.pone.0218073 Cited by (44) \| Cite \| Source
CrowdVariant: a crowdsourcing approach to classify copy number variants (conference) Greenside, Peyton \| Zook, Justin \| Salit, Marc \| Cule, Madeleine \| Poplin, Ryan \| DePristo, Mark Proceedings of the Pacific Symposium (2018) Kohala Coast, Hawaii, USA 10.1142/9789813279827_0021 Cite \| Source
Intertumoral Heterogeneity in SCLC Is Influenced by the Cell Type of Origin (journal article) Yang, Dian \| Denny, Sarah K. \| Greenside, Peyton G. \| Chaikovsky, Andrea C. \| Brady, Jennifer J. \| Ouadah, Youcef \| Granja, Jeffrey M. \| Jahchan, Nadine S. \| Lim, Jing Shan \| Kwok, Shirley \| ... \| Winslow, Monte M. Cancer Discovery, volume 8, issue 10, pages 1316-1331 (2018). 10.1158/2159-8290.CD-17-0987 Cited by (97) \| Cite \| Source
Discovering epistatic feature interactions from neural network models of regulatory DNA sequences (journal article) Greenside, Peyton \| Shimko, Tyler \| Fordyce, Polly \| Kundaje, Anshul Bioinformatics, volume 34, issue 17, pages i629-i637 (2018). 10.1093/bioinformatics/bty575 Cited by (45) \| Cite \| Source \| Open Access
Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively parallel reporter assays (journal article) Movva, Rajiv \| Greenside, Peyton \| Shrikumar, Avanti \| Kundaje, Anshul bioRxiv (2018). 10.1101/393926 Cited by (2) \| Cite \| Source \| Open Access
Prediction of protein-ligand interactions from paired protein sequence motifs and ligand substructures (conference) Greenside, Peyton \| Hillenmeyer, Maureen \| Kundaje, Anshul Pacific Symposium on Biocomputing 2018 (2018) Kohala Coast, Hawaii, USA 10.1142/9789813235533_0003 Cited by (6) \| Cite \| Source \| Open Access
Impact of regulatory variation across human iPSCs and differentiated cells (journal article) Banovich, Nicholas E. \| Li, Yang I. \| Raj, Anil \| Ward, Michelle C. \| Greenside, Peyton \| Calderon, Diego \| Tung, Po Yuan \| Burnett, Jonathan E. \| Myrthil, Marsha \| Thomas, Samantha M. \| ... \| Gilad, Yoav Genome Research, volume 28, issue 1, pages 122-131 (2018). 10.1101/gr.224436.117 Cited by (81) \| Cite \| Source \| Open Access
Evaluation of RNAi and CRISPR technologies by large-scale gene expression profiling in the Connectivity Map (journal article) Smith, Ian \| Greenside, Peyton G. \| Natoli, Ted \| Lahr, David L. \| Wadden, David \| Tirosh, Itay \| Narayan, Rajiv \| Root, David E. \| Golub, Todd R. \| Subramanian, Aravind \| Doench, John G. PLOS Biology, volume 15, issue 11, pages e2003213- (2017). 10.1371/journal.pbio.2003213 Cited by (123) \| Cite \| Source \| Open Access
Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements (journal article) Mumbach, Maxwell R \| Satpathy, Ansuman T \| Boyle, Evan A \| Dai, Chao \| Gowen, Benjamin G \| Cho, Seung Woo \| Nguyen, Michelle L \| Rubin, Adam J \| Granja, Jeffrey M \| Kazane, Katelynn R \| ... \| Chang, Howard Y Nature Genetics, volume 49, issue 11, pages 1602-1612 (2017). 10.1038/ng.3963 Cited by (329) \| Cite \| Source \| Open Access
An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues (journal article) Corces, M Ryan \| Trevino, Alexandro E \| Hamilton, Emily G \| Greenside, Peyton G \| Sinnott-Armstrong, Nicholas A \| Vesuna, Sam \| Satpathy, Ansuman T \| Rubin, Adam J \| Montine, Kathleen S \| Wu, Beijing \| ... \| Chang, Howard Y Nature Methods, volume 14, issue 10, pages 959-962 (2017). 10.1038/nmeth.4396 Cited by (1,245) \| Cite \| Source \| Open Access
Omni-ATAC-seq: Improved ATAC-seq protocol (journal article) Corces, M. Ryan \| Corces, M. Ryan \| Trevino, Alexandro E. \| Hamilton, Emily G. \| Greenside, Peyton G. \| Sinnott-Armstrong, Nicholas A \| Vesuna, Sam \| Satpathy, Ansuman T. \| Rubin, Adam J. \| Montine, Kathleen S. \| ... \| Chang, Howard Y. Protocol Exchange (2017). 10.1038/protex.2017.096 Cited by (12) \| Cite \| Source \| Open Access
PyBoost: A parallelized Python implementation of 2D boosting with hierarchies (journal article) Greenside, Peyton \| Hussami, Nadine \| Chang, Jessica \| Kundaje, Anshul bioRxiv (2017). 10.1101/170803 Cite \| Source
Molecular definition of a metastatic lung cancer state reveals a targetable CD109–Janus kinase–Stat axis (journal article) Chuang, Chen-Hua \| Greenside, Peyton G \| Rogers, Zoë N \| Brady, Jennifer J \| Yang, Dian \| Ma, Rosanna K \| Caswell, Deborah R \| Chiou, Shin-Heng \| Winters, Aidan F \| Grüner, Barbara M \| ... \| Winslow, Monte M Nature Medicine, volume 23, issue 3, pages 291-300 (2017). 10.1038/nm.4285 Cited by (114) \| Cite \| Source
Reverse-complement parameter sharing improves deep learning models for genomics (journal article) Shrikumar, Avanti \| Greenside, Peyton \| Kundaje, Anshul bioRxiv (2017). 10.1101/103663 Cited by (38) \| Cite \| Source
Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution (journal article) Corces, M Ryan \| Buenrostro, Jason D \| Wu, Beijing \| Greenside, Peyton G \| Chan, Steven M \| Koenig, Julie L \| Snyder, Michael P \| Pritchard, Jonathan K \| Kundaje, Anshul \| Greenleaf, William J \| ... \| Chang, Howard Y Nature Genetics, volume 48, issue 10, pages 1193-1203 (2016). 10.1038/ng.3646 Cited by (758) \| Cite \| Source \| Open Access
An Arntl2-Driven Secretome Enables Lung Adenocarcinoma Metastatic Self-Sufficiency (journal article) Brady, Jennifer J. \| Chuang, Chen-Hua \| Greenside, Peyton G. \| Rogers, Zoë N. \| Murray, Christopher W. \| Caswell, Deborah R. \| Hartmann, Ursula \| Connolly, Andrew J. \| Sweet-Cordero, E. Alejandro \| Kundaje, Anshul \| Winslow, Monte M. Cancer Cell, volume 29, issue 5, pages 697-710 (2016). 10.1016/j.ccell.2016.03.003 Cited by (80) \| Cite \| Source \| Open Access
Relating Chemical Structure to Cellular Response: An Integrative Analysis of Gene Expression, Bioactivity, and Structural Data Across 11,000 Compounds (journal article) Chen, B \| Greenside, P \| Paik, H \| Sirota, M \| Hadley, D \| Butte, AJ CPT: Pharmacometrics & Systems Pharmacology, volume 4, issue 10, pages 576-584 (2015). 10.1002/psp4.12009 Cited by (44) \| Cite \| Source \| Open Access
Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions (journal article) Grubert, Fabian \| Zaugg, Judith B. \| Kasowski, Maya \| Ursu, Oana \| Spacek, Damek V. \| Martin, Alicia R. \| Greenside, Peyton \| Srivas, Rohith \| Phanstiel, Doug H. \| Pekowska, Aleksandra \| ... \| Snyder, Michael Cell, volume 162, issue 5, pages 1051-1065 (2015). 10.1016/j.cell.2015.07.048 Cited by (263) \| Cite \| Source \| Open Access