Robi D. Mitra

ScholarGPS® ID: 14414503020234

Affiliation

Washington University in St. Louis, Greater St. Louis, United States

Affiliation History

Field

Life Sciences

Discipline

Genetics

Top Specialties

Metrics Summary

Publication Count

102

Predicted Citations

10,813

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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Pycallingcards: an integrated environment for visualizing, analyzing, and interpreting Calling Cards data (journal article) Guo, Juanru \| Zhang, Wenjin \| Chen, Xuhua \| Yen, Allen \| Chen, Lucy \| Shively, Christian A \| Li, Daofeng \| Wang, Ting \| Dougherty, Joseph D \| Mitra, Robi D Bioinformatics, volume 40, issue 2 (2024). 10.1093/bioinformatics/btae070 Cite \| Source
CSIG-10. SEX-DIFFERENCES IN NF-ΚB SIGNALING DRIVE SEX-BIASED RESPONSES TOWARDS SENESCENCE AND INFLAMMATION IN GLIOBLASTOMA (journal article) Wong, Jason P \| Tripp, Lloyd \| Reinhold, Nicholas \| Broestl, Lauren \| Luo, Jingqin \| Mitra, Robi D \| Rubin, Joshua B Neuro-Oncology, volume 25, issue Supplement_5, pages v42-v42 (2023). 10.1093/neuonc/noad179.0166 Cite \| Source
Calling Cards: A Customizable Platform to Longitudinally Record Protein‐DNA Interactions Over Time in Cells and Tissues (journal article) Yen, Allen \| Mateusiak, Chase \| Sarafinovska, Simona \| Gachechiladze, Mariam A. \| Guo, Juanru \| Chen, Xuhua \| Moudgil, Arnav \| Cammack, Alexander J. \| Hoisington‐Lopez, Jessica \| Crosby, MariaLynn \| ... \| Dougherty, Joseph D. Current Protocols, volume 3, issue 9 (2023). 10.1002/cpz1.883 Cite \| Source
Epigenetic regulation of hybrid epithelial-mesenchymal cell states in cancer (journal article) Sample, Reilly A. \| Nogueira, Marina F. \| Mitra, Robi D. \| Puram, Sidharth V. Oncogene, volume 42, issue 29, pages 2237-2248 (2023). 10.1038/s41388-023-02749-9 Cited by (7) \| Cite \| Source
Zinc cluster transcription factors frequently activate target genes using a non-canonical half-site binding mode (journal article) Recio, Pamela S \| Mitra, Nikhil J \| Shively, Christian A \| Song, David \| Jaramillo, Grace \| Lewis, Kristine Shady \| Chen, Xuhua \| Mitra, Robi D Nucleic Acids Research, volume 51, issue 10, pages 5006-5021 (2023). 10.1093/nar/gkad320 Cite \| Source
A Suite of New Strain Construction Vectors for Gene Expression Knockdown in Budding Yeast (journal article) Shively, Christian A. \| Dong, Fengping \| Mitra, Robi D. ACS Synthetic Biology, volume 12, issue 2, pages 624-633 (2023). 10.1021/acssynbio.2c00547 Cite \| Source
Pooled image-base screening of mitochondria with microraft isolation distinguishes pathogenic mitofusin 2 mutations (journal article) Yenkin, Alex L. \| Bramley, John C. \| Kremitzki, Colin L. \| Waligorski, Jason E. \| Liebeskind, Mariel J. \| Xu, Xinyuan E. \| Chandrasekaran, Vinay D. \| Vakaki, Maria A. \| Bachman, Graham W. \| Mitra, Robi D. \| ... \| Buchser, William J. Communications Biology, volume 5, issue 1 (2022). 10.1038/s42003-022-04089-y Cited by (2) \| Cite \| Source
Measuring transcription factor binding and gene expression using barcoded self-reporting transposon calling cards and transcriptomes (journal article) Lalli, Matthew \| Yen, Allen \| Thopte, Urvashi \| Dong, Fengping \| Moudgil, Arnav \| Chen, Xuhua \| Milbrandt, Jeffrey \| Dougherty, Joseph D \| Mitra, Robi D NAR Genomics and Bioinformatics, volume 4, issue 3 (2022). 10.1093/nargab/lqac061 Cited by (1) \| Cite \| Source
HGG-25. Targeting KLF5 reduces tumorigenic phenotype in a murine glioblastoma (GBM) model (journal article) Abou-Antoun, Tamara \| Kfoury, Najla \| Yang, Lihua \| Warrington, Nicole \| Chen, Xuhua \| Reiss, India \| Wilkinson, Michael \| Mitra, Robi \| Rubin, Josh Neuro-Oncology, volume 24, issue Supplement_1, pages i66-i66 (2022). 10.1093/neuonc/noac079.240 Cite \| Source
Disentangling glial diversity in peripheral nerves at single-nuclei resolution (journal article) Yim, Aldrin K. Y. \| Wang, Peter L. \| Bermingham, John R. \| Hackett, Amber \| Strickland, Amy \| Miller, Timothy M. \| Ly, Cindy \| Mitra, Robi D. \| Milbrandt, Jeffrey Nature Neuroscience, volume 25, issue 2, pages 238-251 (2022). 10.1038/s41593-021-01005-1 Cited by (30) \| Cite \| Source
From karyotypes to precision genomics in 9p deletion and duplication syndromes (journal article) Sams, Eleanor I. \| Ng, Jeffrey K. \| Tate, Victoria \| Claire Hou, Ying-Chen \| Cao, Yang \| Antonacci-Fulton, Lucinda \| Belhassan, Khadija \| Neidich, Julie \| Mitra, Robi D. \| Cole, F. Sessions \| ... \| Turner, Tychele N. Human Genetics and Genomics Advances, volume 3, issue 1, pages 100081- (2022). 10.1016/j.xhgg.2021.100081 Cited by (9) \| Cite \| Source
The qBED track: a novel genome browser visualization for point processes (journal article) Moudgil, Arnav \| Li, Daofeng \| Hsu, Silas \| Purushotham, Deepak \| Wang, Ting \| Mitra, Robi D Bioinformatics, volume 37, issue 8, pages 1168-1170 (2021). 10.1093/bioinformatics/btaa771 Cited by (3) \| Cite \| Source
Brd4-bound enhancers drive cell-intrinsic sex differences in glioblastoma (journal article) Kfoury, Najla \| Qi, Zongtai \| Prager, Briana C. \| Wilkinson, Michael N. \| Broestl, Lauren \| Berrett, Kristopher C. \| Moudgil, Arnav \| Sankararaman, Sumithra \| Chen, Xuhua \| Gertz, Jason \| ... \| Rubin, Joshua B. Proceedings of the National Academy of Sciences, volume 118, issue 16 (2021). 10.1073/pnas.2017148118 Cited by (20) \| Cite \| Source
High-resolution HLA typing by long reads from the R10.3 Oxford nanopore flow cells (journal article) Liu, Chang \| Yang, Xiao \| Duffy, Brian F. \| Hoisington-Lopez, Jessica \| Crosby, MariaLynn \| Porche-Sorbet, Rhonda \| Saito, Katsuyuki \| Berry, Rick \| Swamidass, Victoria \| Mitra, Robi D. Human Immunology (2021). 10.1016/j.humimm.2021.02.005 Cited by (25) \| Cite \| Source
Rapid and Extraction-Free Detection of SARS-CoV-2 from Saliva by Colorimetric Reverse-Transcription Loop-Mediated Isothermal Amplification (journal article) Lalli, Matthew A \| Langmade, Joshua S \| Chen, Xuhua \| Fronick, Catrina C \| Sawyer, Christopher S \| Burcea, Lauren C \| Wilkinson, Michael N \| Fulton, Robert S \| Heinz, Michael \| Buchser, William J \| ... \| Milbrandt, Jeffrey Clinical Chemistry, volume 67, issue 2, pages 415-424 (2021). 10.1093/clinchem/hvaa267 Cited by (153) \| Cite \| Source
Human L1 Transposition Dynamics Unraveled with Functional Data Analysis (journal article) Chen, Di \| Cremona, Marzia A \| Qi, Zongtai \| Mitra, Robi D \| Chiaromonte, Francesca \| Makova, Kateryna D Molecular Biology and Evolution, volume 37, issue 12, pages 3576-3600 (2020). 10.1093/molbev/msaa194 Cited by (2) \| Cite \| Source
High-throughput single-cell functional elucidation of neurodevelopmental disease–associated genes reveals convergent mechanisms altering neuronal differentiation (journal article) Lalli, Matthew A. \| Avey, Denis \| Dougherty, Joseph D. \| Milbrandt, Jeffrey \| Mitra, Robi D. Genome Research, volume 30, issue 9, pages 1317-1331 (2020). 10.1101/gr.262295.120 Cited by (37) \| Cite \| Source
Self-Reporting Transposons Enable Simultaneous Readout of Gene Expression and Transcription Factor Binding in Single Cells (journal article) Moudgil, Arnav \| Wilkinson, Michael N. \| Chen, Xuhua \| He, June \| Cammack, Alexander J. \| Vasek, Michael J. \| Lagunas, Tomás \| Qi, Zongtai \| Lalli, Matthew A. \| Guo, Chuner \| ... \| Mitra, Robi D. Cell, volume 182, issue 4, pages 992-1008.e21 (2020). 10.1016/j.cell.2020.06.037 Cited by (46) \| Cite \| Source
Quantitative analysis of transcription factor binding and expression using calling cards reporter arrays (journal article) Liu, Jiayue \| Shively, Christian A \| Mitra, Robi D Nucleic Acids Research (2020). 10.1093/nar/gkaa141 Cited by (5) \| Cite \| Source
A viral toolkit for recording transcription factor–DNA interactions in live mouse tissues (journal article) Cammack, Alexander J. \| Moudgil, Arnav \| Chen, Jiayang \| Vasek, Michael J. \| Shabsovich, Mark \| McCullough, Katherine \| Yen, Allen \| Lagunas, Tomas \| Maloney, Susan E. \| He, June \| ... \| Dougherty, Joseph D. Proceedings of the National Academy of Sciences, volume 117, issue 18, pages 10003-10014 (2020). 10.1073/pnas.1918241117 Cited by (11) \| Cite \| Source

Title	Investigators	Year	Cost	Agency
PARALLEL ANALYSIS OF TRANSCRIPTION AND PROTEIN-DNA INTERACTIONS IN SINGLE CNS CELLS	Dougherty, Joseph D \| Mitra, Robi D	2020	$93,247	NATIONAL INSTITUTE OF MENTAL HEALTH
COOPERATIVITY AND COLLECTIVE BINDING IN TRANSCRIPTION FACTOR-DNA INTERACTIONS	Mitra, Robi D	2020	$390,496	NATIONAL INSTITUTE OF GENERAL MEDICAL SCIENCES
COOPERATIVITY AND COLLECTIVE BINDING IN TRANSCRIPTION FACTOR-DNA INTERACTIONS	Mitra, Robi D	2019	$389,050	NATIONAL INSTITUTE OF GENERAL MEDICAL SCIENCES
PARALLEL ANALYSIS OF TRANSCRIPTION AND PROTEIN-DNA INTERACTIONS IN SINGLE CNS CELLS	Dougherty, Joseph D \| Mitra, Robi D	2018	$3,148,838	NATIONAL INSTITUTE OF MENTAL HEALTH
SINGLE-CELL ANALYSIS OF PIONEER BINDING AND FUNCTION DURING LINEAGE REPROGRAMMING	Mitra, Robi D \| Morris, Samantha Annette	2018	$305,000	NATIONAL HUMAN GENOME RESEARCH INSTITUTE
COOPERATIVITY AND COLLECTIVE BINDING IN TRANSCRIPTION FACTOR-DNA INTERACTIONS	Mitra, Robi D	2018	$385,020	NATIONAL INSTITUTE OF GENERAL MEDICAL SCIENCES
SINGLE-CELL ANALYSIS OF PIONEER BINDING AND FUNCTION DURING LINEAGE REPROGRAMMING	Mitra, Robi D \| Morris, Samantha Annette	2017	$305,000	NATIONAL HUMAN GENOME RESEARCH INSTITUTE
AN INDUCIBLE MOLECULAR MEMORY SYSTEM TO RECORD TRANSIENT STATES OF CNS CELLS	Mitra, Robi D	2017	$1,213,635	NATIONAL INSTITUTE OF MENTAL HEALTH
AN INDUCIBLE MOLECULAR MEMORY SYSTEM TO RECORD TRANSIENT STATES OF CNS CELLS	Mitra, Robi D	2016	$1,216,410	NATIONAL INSTITUTE OF MENTAL HEALTH
DISSECTING NEURAL CELL FATE SPECIFICATION USING TRANSPOSON CALLING CARDS	Mitra, Robi D	2016	$332,500	NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE
DISSECTING NEURAL CELL FATE SPECIFICATION USING TRANSPOSON CALLING CARDS	Mitra, Robi D	2015	$332,500	NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE
AN INDUCIBLE MOLECULAR MEMORY SYSTEM TO RECORD TRANSIENT STATES OF CNS CELLS	Mitra, Robi D	2015	$1,146,862	NATIONAL INSTITUTE OF MENTAL HEALTH
DISSECTING NEURAL CELL FATE SPECIFICATION USING TRANSPOSON CALLING CARDS	Mitra, Robi D	2014	$329,174	NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE
DISSECTING NEURAL CELL FATE SPECIFICATION USING TRANSPOSON CALLING CARDS	Mitra, Robi D	2013	$320,863	NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE
DISSECTING NEURAL CELL FATE SPECIFICATION USING TRANSPOSON CALLING CARDS	Mitra, Robi D	2012	$332,500	NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE
HIGHLY PARALLEL EDMAN SEQUENCING OF INDIVIDUAL PEPTIDE MOLECULES	Mitra, Robi D	2012	$192,409	NATIONAL CANCER INSTITUTE
METHYLMAP: A TECHNOLOGY TO ANALYZE PROMOTER METHYLATION IN MICRODISSECTED CELLS	Mitra, Robi D	2011	$364,914	NATIONAL INSTITUTE ON DRUG ABUSE
HIGHLY PARALLEL EDMAN SEQUENCING OF INDIVIDUAL PEPTIDE MOLECULES	Mitra, Robi D	2011	$224,478	NATIONAL CANCER INSTITUTE
HIGHLY PARALLEL EDMAN SEQUENCING OF INDIVIDUAL PEPTIDE MOLECULES	Mitra, Robi D	2010	$231,420	NATIONAL CANCER INSTITUTE
METHYLMAP: A TECHNOLOGY TO ANALYZE PROMOTER METHYLATION IN MICRODISSECTED CELLS	Mitra, Robi D	2010	$376,200	NATIONAL INSTITUTE ON DRUG ABUSE
METHYLMAP: A TECHNOLOGY TO ANALYZE PROMOTER METHYLATION IN MICRODISSECTED CELLS	Mitra, Robi D	2009	$164,044	NATIONAL INSTITUTE ON DRUG ABUSE
METHYLMAP: A TECHNOLOGY TO ANALYZE PROMOTER METHYLATION IN MICRODISSECTED CELLS	Mitra, Robi D	2009	$380,000	NATIONAL INSTITUTE ON DRUG ABUSE
"Calling Cards" for DNA-binding proteins: A tool for their genome-wide mapping	Mitra, Robi D	2008	$223,440	NATIONAL CENTER FOR RESEARCH RESOURCES
METHYLMAP: A TECHNOLOGY TO ANALYZE PROMOTER METHYLATION IN MICRODISSECTED CELLS	Mitra, Robi D	2008	$380,000	NATIONAL INSTITUTE ON DRUG ABUSE