Julien Roux

ScholarGPS® ID: 13068276415579

Affiliation

Swiss Institute of Bioinformatics, Lausanne, Switzerland

Affiliation History

Field

Life Sciences

Discipline

Genetics

Top Specialties

Gene Expression | Genomics | Tissue (biology) | Transcriptomics Technologies | DNA

Metrics Summary

Publication Count

Predicted Citations

1,846

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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IL-20 subfamily cytokines impair the oesophageal epithelial barrier by diminishing filaggrin in eosinophilic oesophagitis (journal article) Kaymak, Tanay \| Kaya, Berna \| Wuggenig, Philipp \| Nuciforo, Sandro \| Göldi, Andreas \| Oswald, Franz \| Roux, Julien \| Noti, Mario \| Melhem, Hassan \| Hruz, Petr \| Niess, Jan Hendrik Gut, volume 72, issue 5, pages 821-833 (2023). 10.1136/gutjnl-2022-327166 Cited by (13) \| Cite \| Source
Characteristics, similarities and differences comparing fibrotic alveolar to airway basal cells (conference) Blumer, S \| Khan, P \| Roux, J \| Savic, S \| Knudsen, L \| Jonigk, D \| Kuehnel, M \| Tamm, M \| Hostettler, K ERS International Congress 2022 abstracts (2022) 10.1183/13993003.congress-2022.3079 Cite \| Source
Alveolar Basal Cells Differentiate towards Secretory Epithelial- and Aberrant Basaloid-like Cells In Vitro (journal article) Khan, Petra \| Roux, Julien \| Blumer, Sabrina \| Knudsen, Lars \| Jonigk, Danny \| Kuehnel, Mark P. \| Tamm, Michael \| Hostettler, Katrin E. Cells, volume 11, issue 11, pages 1820- (2022). 10.3390/cells11111820 Cited by (7) \| Cite \| Source
Dntt expression reveals developmental hierarchy and lineage specification of hematopoietic progenitors. (journal article) Tussiwand, Roxane \| Klein, Fabian \| Roux, Julien \| Cvijetic, Grozdan \| Tsapogas, Panagiotis The Journal of Immunology, volume 208, issue 1_Supplement, pages 107.02-107.02 (2022). 10.4049/jimmunol.208.Supp.107.02 Cite \| Source
Basal-Like Cells Cultured from Peripheral Fibrotic Lung Tissue Show Transcriptomic Differences to Airway Basal Cells (conference) Khan, P. \| Blumer, S. \| Roux, J. \| Savic, S. \| Knudsen, L. \| Jonigk, D.D. \| Kuehnel, M.P. \| Tamm, M. \| Hostettler, K.E. American Thoracic Society 2022 International Conference, May 13-18, 2022 - San Francisco, CA (2022) 10.1164/ajrccm-conference.2022.205.1_MeetingAbstracts.A4993 Cite \| Source
Dntt expression reveals developmental hierarchy and lineage specification of hematopoietic progenitors (journal article) Klein, Fabian \| Roux, Julien \| Cvijetic, Grozdan \| Rodrigues, Patrick Fernandes \| von Muenchow, Lilly \| Lubin, Ruth \| Pelczar, Pawel \| Yona, Simon \| Tsapogas, Panagiotis \| Tussiwand, Roxane Nature Immunology, volume 23, issue 4, pages 505-517 (2022). 10.1038/s41590-022-01167-5 Cited by (19) \| Cite \| Source
Basal-Like Cell-Conditioned Medium Exerts Anti-Fibrotic Effects In Vitro and In Vivo (journal article) Khan, Petra \| Fytianos, Kleanthis \| Blumer, Sabrina \| Roux, Julien \| Gazdhar, Amiq \| Savic, Spasenija \| Knudsen, Lars \| Jonigk, Danny \| Kuehnel, Mark P. \| Mykoniati, Sofia \| ... \| Hostettler, Katrin E. Frontiers in Bioengineering and Biotechnology, volume 10 (2022). 10.3389/fbioe.2022.844119 Cited by (6) \| Cite \| Source
Epithelial GPR35 protects from Citrobacter rodentium infection by preserving goblet cells and mucosal barrier integrity (journal article) Melhem, Hassan \| Kaya, Berna \| Kaymak, Tanay \| Wuggenig, Philipp \| Flint, Emilio \| Roux, Julien \| Oost, Koen C. \| Cavelti-Weder, Claudia \| Balmer, Maria L. \| Walser, Jean-Claude \| ... \| Niess, Jan Hendrik Mucosal Immunology, volume 15, issue 3, pages 443-458 (2022). 10.1038/s41385-022-00494-y Cited by (17) \| Cite \| Source
Fms-like tyrosine kinase 3 is a regulator of the cardiac side population in mice (journal article) Della Verde, Giacomo \| Mochizuki, Michika \| Lorenz, Vera \| Roux, Julien \| Xu, Lifen \| Ramin-Wright, Leandra \| Pfister, Otmar \| Kuster, Gabriela M Life Science Alliance, volume 5, issue 3, pages e202101112- (2022). 10.26508/lsa.202101112 Cited by (2) \| Cite \| Source
In vitro culture of basal-like cells from fibrotic peripheral lung tissue (conference) Blumer, Sabrina \| Khan, Petra \| Roux, Julien \| Savic, Spasenija \| Knudsen, Lars \| Jonigk, Danny \| Kuehnel, Mark \| Tamm, Michael \| Hostettler, Katrin Esther ERS International Congress 2021 abstracts (2021) 10.1183/13993003.congress-2021.PA3692 Cite \| Source
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals (journal article) Bastian, Frederic B \| Roux, Julien \| Niknejad, Anne \| Comte, Aurélie \| Fonseca Costa, Sara S \| de Farias, Tarcisio Mendes \| Moretti, Sébastien \| Parmentier, Gilles \| de Laval, Valentine Rech \| Rosikiewicz, Marta \| ... \| Robinson-Rechavi, Marc Nucleic Acids Research, volume 49, issue D1, pages D831-D847 (2021). 10.1093/nar/gkaa793 Cited by (91) \| Cite \| Source
Transcriptomic profiling reveals disease-specific characteristics of epithelial cells in idiopathic pulmonary fibrosis (journal article) Boesch, Maximilian \| Baty, Florent \| Brutsche, Martin H. \| Tamm, Michael \| Roux, Julien \| Knudsen, Lars \| Gazdhar, Amiq \| Geiser, Thomas \| Khan, Petra \| Hostettler, Katrin E. Respiratory Research, volume 21, issue 1 (2020). 10.1186/s12931-020-01414-z Cited by (11) \| Cite \| Source
Fibrosis Specific KRT5+ Progenitor Cells in Peripheral IPF Lung: Characteristics and Potential Role (conference) Khan, P. \| Roux, J. \| Savic, S. \| Knudsen, L. \| Jonigk, D.D. \| Kuehnel, M.P. \| Gazdhar, A. \| Geiser, T.K. \| Tamm, M. \| Hostettler, K.E. American Thoracic Society 2020 International Conference, May 15-20, 2020 - Philadelphia, PA (2020) 10.1164/ajrccm-conference.2020.201.1_MeetingAbstracts.A2247 Cite \| Source
Loss of the branched-chain amino acid transporter CD98hc alters the development of colonic macrophages in mice (journal article) Wuggenig, Philipp \| Kaya, Berna \| Melhem, Hassan \| Ayata, C. Korcan \| Abdelrahman, Karim \| Ademi, Gentiana \| Aepli, Patrick \| Anderegg, Claudia \| Antonino, Anca-Teodora \| Archanioti, Eva \| ... \| Frei, Pascal Communications Biology, volume 3, issue 1 (2020). 10.1038/s42003-020-0842-3 Cited by (19) \| Cite \| Source
Long-lived T follicular helper cells retain plasticity and help sustain humoral immunity (journal article) Künzli, Marco \| Schreiner, David \| Pereboom, Tamara C. \| Swarnalekha, Nivedya \| Litzler, Ludivine C. \| Lötscher, Jonas \| Ertuna, Yusuf I. \| Roux, Julien \| Geier, Florian \| Jakob, Roman P. \| ... \| King, Carolyn G. Science Immunology, volume 5, issue 45 (2020). 10.1126/sciimmunol.aay5552 Cited by (66) \| Cite \| Source
A comparison of gene expression and DNA methylation patterns across tissues and species (journal article) Blake, Lauren E. \| Roux, Julien \| Hernando-Herraez, Irene \| Banovich, Nicholas E. \| Perez, Raquel Garcia \| Hsiao, Chiaowen Joyce \| Eres, Ittai \| Cuevas, Claudia \| Marques-Bonet, Tomas \| Gilad, Yoav Genome Research, volume 30, issue 2, pages 250-262 (2020). 10.1101/gr.254904.119 Cited by (77) \| Cite \| Source
miR-221-3p Drives the Shift of M2-Macrophages to a Pro-Inflammatory Function by Suppressing JAK3/STAT3 Activation (journal article) Quero, Lilian \| Tiaden, André N. \| Hanser, Edveena \| Roux, Julien \| Laski, Artur \| Hall, Jonathan \| Kyburz, Diego Frontiers in Immunology, volume 10 (2020). 10.3389/fimmu.2019.03087 Cited by (78) \| Cite \| Source
Sex-specific changes in gene expression in response to estrogen pollution around the onset of sex differentiation in grayling (Salmonidae) (journal article) Selmoni, Oliver M. \| Maitre, Diane \| Roux, Julien \| Wilkins, Laetitia G. E. \| Marques da Cunha, Lucas \| Vermeirssen, Etienne L. M. \| Knörr, Susanne \| Robinson-Rechavi, Marc \| Wedekind, Claus BMC Genomics, volume 20, issue 1 (2019). 10.1186/s12864-019-5955-z Cited by (10) \| Cite \| Source
The transcription factor Duxbl mediates elimination of pre-T cells that fail β-selection (journal article) Klein, Fabian \| Mitrovic, Mladen \| Roux, Julien \| Engdahl, Corinne \| von Muenchow, Lilly \| Alberti-Servera, Llucia \| Fehling, Hans Jörg \| Pelczar, Pawel \| Rolink, Antonius \| Tsapogas, Panagiotis Journal of Experimental Medicine, volume 216, issue 3, pages 638-655 (2019). 10.1084/jem.20181444 Cited by (11) \| Cite \| Source
A comparison of gene expression and DNA methylation patterns across tissues and species (journal article) Blake, Lauren E \| Roux, Julien \| Hernando-Herraez, Irene \| Banovich, Nicholas E. \| Perez, R. Garcia \| Hsiao, Chiaowen Joyce \| Eres, I. \| Chavarria, Claudia \| Marques-Bonet, Tomas \| Gilad, Yoav bioRxiv (2018). 10.1101/487413 Cite \| Source