Margaret C. Dunagin

ScholarGPS® ID: 12310984372161

Affiliation

University of Pennsylvania, Philadelphia, United States

Affiliation History

Field

Engineering and Computer Science

Discipline

Biomedical Engineering

Top Specialties

RNA | Gene Expression

Metrics Summary

Publication Count

Predicted Citations

3,216

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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Post-transcriptional splicing can occur in a slow-moving zone around the gene (journal article) Coté, Allison \| O'Farrell, Aoife \| Dardani, Ian \| Dunagin, Margaret \| Coté, Chris \| Wan, Yihan \| Bayatpour, Sareh \| Drexler, Heather L \| Alexander, Katherine A \| Chen, Fei \| ... \| Raj, Arjun eLife, volume 12 (2024). 10.7554/eLife.91357.3 Cite \| Source
Post-transcriptional splicing can occur in a slow-moving zone around the gene (journal article) Coté, Allison \| O'Farrell, Aoife \| Dardani, Ian \| Dunagin, Margaret \| Coté, Chris \| Wan, Yihan \| Bayatpour, Sareh \| Drexler, Heather L \| Alexander, Katherine A \| Chen, Fei \| ... \| Raj, Arjun eLife, volume 12 (2024). 10.7554/eLife.91357 Cited by (2) \| Cite \| Source
CTCF blocks antisense transcription initiation at divergent promoters (journal article) Luan, Jing \| Vermunt, Marit W. \| Syrett, Camille M. \| Coté, Allison \| Tome, Jacob M. \| Zhang, Haoyue \| Huang, Anran \| Luppino, Jennifer M. \| Keller, Cheryl A. \| Giardine, Belinda M. \| ... \| Blobel, Gerd A. Nature Structural & Molecular Biology, volume 29, issue 11, pages 1136-1144 (2022). 10.1038/s41594-022-00855-y Cited by (9) \| Cite \| Source
Systematically quantifying morphological features reveals constraints on organoid phenotypes (journal article) Beck, Lauren E. \| Lee, Jasmine \| Coté, Christopher \| Dunagin, Margaret C. \| Lukonin, Ilya \| Salla, Nikkita \| Chang, Marcello K. \| Hughes, Alex J. \| Mornin, Joseph D. \| Gartner, Zev J. \| ... \| Raj, Arjun Cell Systems, volume 13, issue 7, pages 547-560.e3 (2022). 10.1016/j.cels.2022.05.008 Cited by (6) \| Cite \| Source
Responsiveness to perturbations is a hallmark of transcription factors that maintain cell identity in vitro (journal article) Mellis, Ian A. \| Edelstein, Hailey I. \| Truitt, Rachel \| Goyal, Yogesh \| Beck, Lauren E. \| Symmons, Orsolya \| Dunagin, Margaret C. \| Linares Saldana, Ricardo A. \| Shah, Parisha P. \| Pérez-Bermejo, Juan A. \| ... \| Raj, Arjun Cell Systems, volume 12, issue 9, pages 885-899.e8 (2021). 10.1016/j.cels.2021.07.003 Cited by (8) \| Cite \| Source
p53 mediates target gene association with nuclear speckles for amplified RNA expression (journal article) Alexander, Katherine A. \| Coté, Allison \| Nguyen, Son C. \| Zhang, Liguo \| Gholamalamdari, Omid \| Agudelo-Garcia, Paula \| Lin-Shiao, Enrique \| Tanim, K.M.A. \| Lim, Joan \| Biddle, Nicolas \| ... \| Berger, Shelley L. Molecular Cell, volume 81, issue 8, pages 1666-1681.e6 (2021). 10.1016/j.molcel.2021.03.006 Cited by (40) \| Cite \| Source
LADL: light-activated dynamic looping for endogenous gene expression control (journal article) Kim, Ji Hun \| Rege, Mayuri \| Valeri, Jacqueline \| Dunagin, Margaret C. \| Metzger, Aryeh \| Titus, Katelyn R. \| Gilgenast, Thomas G. \| Gong, Wanfeng \| Beagan, Jonathan A. \| Raj, Arjun \| Phillips-Cremins, Jennifer E. Nature Methods, volume 16, issue 7, pages 633-639 (2019). 10.1038/s41592-019-0436-5 Cited by (101) \| Cite \| Source
ClampFISH detects individual nucleic acid molecules using click chemistry–based amplification (journal article) Rouhanifard, Sara H \| Mellis, Ian A \| Dunagin, Margaret \| Bayatpour, Sareh \| Jiang, Connie L \| Dardani, Ian \| Symmons, Orsolya \| Emert, Benjamin \| Torre, Eduardo \| Cote, Allison \| ... \| Raj, Arjun Nature Biotechnology, volume 37, issue 1, pages 84-89 (2019). 10.1038/nbt.4286 Cited by (98) \| Cite \| Source
IL-6 Mediates Cross-Talk between Tumor Cells and Activated Fibroblasts in the Tumor Microenvironment (journal article) Karakasheva, Tatiana A. \| Lin, Eric W. \| Tang, Qiaosi \| Qiao, Edmund \| Waldron, Todd J. \| Soni, Monica \| Klein-Szanto, Andres J. \| Sahu, Varun \| Basu, Devraj \| Ohashi, Shinya \| ... \| Rustgi, Anil K. Cancer Research, volume 78, issue 17, pages 4957-4970 (2018). 10.1158/0008-5472.CAN-17-2268 Cited by (186) \| Cite \| Source
LADL: Light-activated dynamic looping for endogenous gene expression control (journal article) Rege, Mayuri \| Kim, Ji Hun \| Valeri, Jacqueline \| Dunagin, Margaret \| Metzger, Aryeh \| Gong, Wanfeng \| Beagan, Jonathan A. \| Raj, Arjun \| Phillips-Cremins, Jennifer E. bioRxiv (2018). 10.1101/349340 Cited by (3) \| Cite \| Source
Erratum: Corrigendum: Rare cell variability and drug-induced reprogramming as a mode of cancer drug resistance (journal article) Shaffer, Sydney M. \| Dunagin, Margaret C. \| Torborg, Stefan R. \| Torre, Eduardo A. \| Emert, Benjamin \| Krepler, Clemens \| Beqiri, Marilda \| Sproesser, Katrin \| Brafford, Patricia A. \| Xiao, Min \| ... \| Raj, Arjun Nature, volume 555, issue 7695, pages 274-274 (2018). 10.1038/nature25162 Cited by (4) \| Cite \| Source
Single-molecule fluorescent amplification of RNA using clampFISH probes (journal article) Rouhanifard, Sara H. \| Dunagin, Margaret \| Mellis, Ian A \| Bayatpour, Sareh \| Symmons, Orsolya \| Cote, Allison \| Raj, Arjun bioRxiv (2017). 10.1101/222794 Cited by (9) \| Cite \| Source \| Open Access
Intercellular mRNA trafficking via membrane nanotube-like extensions in mammalian cells (journal article) Haimovich, Gal \| Ecker, Christopher M. \| Dunagin, Margaret C. \| Eggan, Elliott \| Raj, Arjun \| Gerst, Jeffrey E. \| Singer, Robert H. Proceedings of the National Academy of Sciences, volume 114, issue 46 (2017). 10.1073/pnas.1706365114 Cited by (67) \| Cite \| Source \| Open Access
Group 1 Innate Lymphoid Cell Lineage Identity Is Determined by a cis-Regulatory Element Marked by a Long Non-coding RNA (journal article) Mowel, Walter K. \| McCright, Sam J. \| Kotzin, Jonathan J. \| Collet, Magalie A. \| Uyar, Asli \| Chen, Xin \| DeLaney, Alexandra \| Spencer, Sean P. \| Virtue, Anthony T. \| Yang, EnJun \| ... \| Henao-Mejia, Jorge Immunity, volume 47, issue 3, pages 435-449.e8 (2017). 10.1016/j.immuni.2017.08.012 Cited by (58) \| Cite \| Source
Rare cell variability and drug-induced reprogramming as a mode of cancer drug resistance (journal article) Shaffer, Sydney M. \| Dunagin, Margaret C. \| Torborg, Stefan R. \| Torre, Eduardo A. \| Emert, Benjamin \| Krepler, Clemens \| Beqiri, Marilda \| Sproesser, Katrin \| Brafford, Patricia A. \| Xiao, Min \| ... \| Raj, Arjun Nature, volume 546, issue 7658, pages 431-435 (2017). 10.1038/nature22794 Cited by (747) \| Cite \| Source \| Open Access
Intercellular mRNA Trafficking Via Membrane Nanotubes In Mammalian Cells (journal article) Haimovich, Gal \| Ecker, Christopher \| Dunagin, Margaret \| Eggan, Elliot \| Raj, Arjun \| Gerst, Jeffrey E. \| Singer, Robert H. bioRxiv (2017). 10.1101/137836 Cited by (1) \| Cite \| Source \| Open Access
The long non-coding RNA Morrbid regulates Bim and short-lived myeloid cell lifespan (journal article) Kotzin, Jonathan J. \| Spencer, Sean P. \| McCright, Sam J. \| Kumar, Dinesh B. Uthaya \| Collet, Magalie A. \| Mowel, Walter K. \| Elliott, Ellen N. \| Uyar, Asli \| Makiya, Michelle A. \| Dunagin, Margaret C. \| ... \| Henao-Mejia, Jorge Nature, volume 537, issue 7619, pages 239-243 (2016). 10.1038/nature19346 Cited by (217) \| Cite \| Source \| Open Access
Single-cell differences in matrix gene expression do not predict matrix deposition (journal article) Cote, Allison J. \| McLeod, Claire M. \| Farrell, Megan J. \| McClanahan, Patrick D. \| Dunagin, Margaret C. \| Raj, Arjun \| Mauck, Robert L. Nature Communications, volume 7, issue 1 (2016). 10.1038/ncomms10865 Cited by (35) \| Cite \| Source \| Open Access
Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution (journal article) Cabili, Moran N \| Dunagin, Margaret C \| McClanahan, Patrick D \| Biaesch, Andrew \| Padovan-Merhar, Olivia \| Regev, Aviv \| Rinn, John L \| Raj, Arjun Genome Biology, volume 16, issue 1 (2015). 10.1186/s13059-015-0586-4 Cited by (530) \| Cite \| Source \| Open Access
Visualization of lncRNA by Single-Molecule Fluorescence In Situ Hybridization (book chapter) In Nuclear Bodies and Noncoding RNAs Dunagin, Margaret \| Cabili, Moran N. \| Rinn, John \| Raj, Arjun Springer New York (2015) 10.1007/978-1-4939-2253-6_1 Cited by (64) \| Cite \| Source