Michiel Vermeulen

ScholarGPS® ID: 11117446203716

Affiliation

Radboud University Nijmegen, Nijmegen, Netherlands

Affiliation History

Field

Life Sciences

Discipline

Molecular and Cell Biology

Top Specialties

Metrics Summary

Publication Count

179

Predicted Citations

18,739

Predicted h-index

Ranking

Publications and Citation History

Publications based on Top Specialties

Types of Publication

Publications
Books
Patents
NIH/NSF

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Estrogen receptor 1 chromatin profiling in human breast tumors reveals high inter-patient heterogeneity with enrichment of risk SNPs and enhancer activity at most-conserved regions (journal article) Joosten, Stacey E.P. \| Gregoricchio, Sebastian \| Stelloo, Suzan \| Yapıcı, Elif \| Huang, Chia-Chi Flora \| Yavuz, Kerim \| Donaldson Collier, Maria \| Morova, Tunç \| Altintaş, Umut Berkay \| Kim, Yongsoo \| ... \| Zwart, Wilbert Genome Research (2024). 10.1101/gr.278680.123 Cite \| Source
GFI1B and LSD1 repress myeloid traits during megakaryocyte differentiation (journal article) Venhuizen, Jeron \| van Bergen, Maaike G. J. M. \| Bergevoet, Saskia M. \| Gilissen, Daan \| Spruijt, Cornelia G. \| Wingens, Laura \| van den Akker, Emile \| Vermeulen, Michiel \| Jansen, Joop H. \| Martens, Joost H. A. \| van der Reijden, Bert A. Communications Biology, volume 7, issue 1 (2024). 10.1038/s42003-024-06090-z Cite \| Source
Profiling of plasma extracellular vesicles identifies proteins that strongly associate with patient’s global assessment of disease activity in rheumatoid arthritis (journal article) Arntz, Onno J. \| Thurlings, Rogier M. \| Blaney Davidson, Esmeralda N. \| Jansen, Pascal W. T. C. \| Vermeulen, Michiel \| Koenders, Marije I. \| van der Kraan, Peter M. \| van de Loo, Fons A. J. Frontiers in Medicine, volume 10 (2024). 10.3389/fmed.2023.1247778 Cite \| Source
A chromatin-regulated biphasic circuit coordinates IL-1β-mediated inflammation (journal article) Fok, Ezio T. \| Moorlag, Simone J. C. F. M. \| Negishi, Yutaka \| Groh, Laszlo A. \| dos Santos, Jéssica Cristina \| Gräwe, Cathrin \| Monge, Valerie Villacorta \| Craenmehr, Daphne D. D. \| van Roosmalen, Mellanie \| da Cunha Jolvino, David Pablo \| ... \| Mhlanga, Musa M. Nature Genetics, volume 56, issue 1, pages 85-99 (2024). 10.1038/s41588-023-01598-2 Cited by (5) \| Cite \| Source
Transcriptomics and proteomics reveal distinct biology for lymph node metastases and tumour deposits in colorectal cancer (journal article) Brouwer, Nelleke PM \| Webbink, Loth \| Haddad, Tariq S \| Rutgers, Natasja \| van Vliet, Shannon \| Wood, Colin S \| Jansen, Pascal WTC \| Lafarge, Maxime W \| de Wilt, Johannes HW \| Hugen, Niek \| ... \| Nagtegaal, Iris D The Journal of Pathology, volume 261, issue 4, pages 401-412 (2023). 10.1002/path.6196 Cited by (4) \| Cite \| Source
Quantification of absolute transcription factor binding affinities in the native chromatin context using BANC-seq (journal article) Neikes, Hannah K. \| Kliza, Katarzyna W. \| Gräwe, Cathrin \| Wester, Roelof A. \| Jansen, Pascal W. T. C. \| Lamers, Lieke A. \| Baltissen, Marijke P. \| van Heeringen, Simon J. \| Logie, Colin \| Teichmann, Sarah A. \| ... \| Vermeulen, Michiel Nature Biotechnology, volume 41, issue 12, pages 1801-1809 (2023). 10.1038/s41587-023-01715-w Cited by (7) \| Cite \| Source
A novel antifolate suppresses growth of FPGS-deficient cells and overcomes methotrexate resistance (journal article) van der Krift, Felix \| Zijlmans, Dick W \| Shukla, Rhythm \| Javed, Ali \| Koukos, Panagiotis I \| Schwarz, Laura LE \| Timmermans-Sprang, Elpetra PM \| Maas, Peter EM \| Gahtory, Digvijay \| van den Nieuwboer, Maurits \| ... \| Maurice, Madelon M Life Science Alliance, volume 6, issue 11, pages e202302058- (2023). 10.26508/lsa.202302058 Cited by (1) \| Cite \| Source
Galectin-9 interacts with Vamp-3 to regulate cytokine secretion in dendritic cells (journal article) Santalla Méndez, Rui \| Rodgers Furones, Andrea \| Classens, René \| Fedorova, Kristina \| Haverdil, Manon \| Canela Capdevila, Marta \| van Duffelen, Anne \| Spruijt, Cornelia G. \| Vermeulen, Michiel \| ter Beest, Martin \| ... \| Querol Cano, Laia Cellular and Molecular Life Sciences, volume 80, issue 10 (2023). 10.1007/s00018-023-04954-x Cited by (2) \| Cite \| Source
Live cell transcription-coupled nucleotide excision repair dynamics revisited (journal article) Llerena Schiffmacher, Diana A. \| Kliza, Katarzyna W. \| Theil, Arjan F. \| Kremers, Gert-Jan \| Demmers, Jeroen A.A. \| Ogi, Tomoo \| Vermeulen, Michiel \| Vermeulen, Wim \| Pines, Alex DNA Repair, volume 130 (2023). 10.1016/j.dnarep.2023.103566 Cited by (2) \| Cite \| Source
Determining DNA–Protein Binding Affinities and Specificities from Crude Lysates Using a Combined SILAC/TMT Labeling Strategy (journal article) Gräwe, Cathrin \| Hernandez-Quiles, Miguel \| Jansen, Pascal W. T. C. \| Brimmers, Annika \| Vermeulen, Michiel Journal of Proteome Research, volume 22, issue 8, pages 2683-2693 (2023). 10.1021/acs.jproteome.3c00248 Cited by (1) \| Cite \| Source
Dynamics and Composition of Small Heat Shock Protein Condensates and Aggregates (journal article) Joosten, Joep \| van Sluijs, Bob \| Vree Egberts, Wilma \| Emmaneel, Martin \| Jansen, Pascal W.T.C. \| Vermeulen, Michiel \| Boelens, Wilbert \| Bonger, Kimberly M. \| Spruijt, Evan Journal of Molecular Biology, volume 435, issue 13, pages 168139- (2023). 10.1016/j.jmb.2023.168139 Cited by (5) \| Cite \| Source
THRONCAT: metabolic labeling of newly synthesized proteins using a bioorthogonal threonine analog (journal article) Ignacio, Bob J. \| Dijkstra, Jelmer \| Mora, Natalia \| Slot, Erik F. J. \| van Weijsten, Margot J. \| Storkebaum, Erik \| Vermeulen, Michiel \| Bonger, Kimberly M. Nature Communications, volume 14, issue 1 (2023). 10.1038/s41467-023-39063-7 Cited by (12) \| Cite \| Source
TGF-β Type I Receptor Signaling in Melanoma Liver Metastases Increases Metastatic Outgrowth (journal article) Marvin, Dieuwke L. \| Dijkstra, Jelmer \| Zulfiqar, Rabia M. \| Vermeulen, Michiel \| ten Dijke, Peter \| Ritsma, Laila International Journal of Molecular Sciences, volume 24, issue 10, pages 8676- (2023). 10.3390/ijms24108676 Cited by (1) \| Cite \| Source
PRC2.1- and PRC2.2-specific accessory proteins drive recruitment of different forms of canonical PRC1 (journal article) Glancy, Eleanor \| Wang, Cheng \| Tuck, Ellen \| Healy, Evan \| Amato, Simona \| Neikes, Hannah K. \| Mariani, Andrea \| Mucha, Marlena \| Vermeulen, Michiel \| Pasini, Diego \| Bracken, Adrian P. Molecular Cell, volume 83, issue 9, pages 1393-1411.e7 (2023). 10.1016/j.molcel.2023.03.018 Cited by (14) \| Cite \| Source
ONECUT2 regulates RANKL-dependent enterocyte and microfold cell differentiation in the small intestine; a multi-omics study (journal article) Luna Velez, Maria V \| Neikes, Hannah K \| Snabel, Rebecca R \| Quint, Yarah \| Qian, Chen \| Martens, Aniek \| Veenstra, Gert Jan C \| Freeman, Michael R \| van Heeringen, Simon J \| Vermeulen, Michiel Nucleic Acids Research, volume 51, issue 3, pages 1277-1296 (2023). 10.1093/nar/gkac1236 Cited by (4) \| Cite \| Source
Multiomics of Colorectal Cancer Organoids Reveals Putative Mediators of Cancer Progression Resulting from SMAD4 Inactivation (journal article) Dijkstra, Jelmer J. \| Neikes, Hannah K. \| Rezaeifard, Somayeh \| Ma, Xuhui \| Voest, Emile E. \| Tauriello, Daniele V. F. \| Vermeulen, Michiel Journal of Proteome Research, volume 22, issue 1, pages 138-151 (2023). 10.1021/acs.jproteome.2c00551 Cited by (9) \| Cite \| Source
Off-the-shelf proximity biotinylation using ProtA-TurboID (journal article) Santos-Barriopedro, Irene \| van Mierlo, Guido \| Vermeulen, Michiel Nature Protocols, volume 18, issue 1, pages 36-57 (2023). 10.1038/s41596-022-00748-w Cited by (4) \| Cite \| Source
HNF1β ‐associated cyst development and electrolyte disturbances are not explained by BAIAP2L2 expression (journal article) Tholen, Lotte E. \| Schigt, Heidi \| Kleuskens, Sanne G. E. \| Bos, Caro \| Spruijt, Cornelia G. \| Willemsen, Brigith \| Vermeulen, Michiel \| Hoenderop, Joost G. J. \| de Baaij, Jeroen H. F. The FASEB Journal, volume 37, issue 1 (2023). 10.1096/fj.202201121R Cite \| Source
Primary Focal Segmental Glomerulosclerosis Plasmas Increase Lipid Droplet Formation and Perilipin-2 Expression in Human Podocytes (journal article) den Braanker, Dirk J. W. \| Maas, Rutger J. H. \| van Mierlo, Guido \| Parr, Naomi M. J. \| Bakker-van Bebber, Marinka \| Deegens, Jeroen K. J. \| Jansen, Pascal W. T. C. \| Gloerich, Jolein \| Willemsen, Brigith \| Dijkman, Henry B. \| ... \| van der Vlag, Johan International Journal of Molecular Sciences, volume 24, issue 1, pages 194- (2022). 10.3390/ijms24010194 Cited by (1) \| Cite \| Source
N6-methyladenosine (m6A) reader Pho92 is recruited co-transcriptionally and couples translation to mRNA decay to promote meiotic fitness in yeast (journal article) Varier, Radhika A \| Sideri, Theodora \| Capitanchik, Charlotte \| Manova, Zornitsa \| Calvani, Enrica \| Rossi, Alice \| Edupuganti, Raghu R \| Ensinck, Imke \| Chan, Vincent WC \| Patel, Harshil \| ... \| van Werven, Folkert J eLife, volume 11 (2022). 10.7554/eLife.84034 Cited by (11) \| Cite \| Source